View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6583_low_6 (Length: 361)
Name: NF6583_low_6
Description: NF6583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6583_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 76 - 265
Target Start/End: Original strand, 38316543 - 38316733
Alignment:
| Q |
76 |
actctaaaacctatatctaacgaagaactgtcttattttattaggagcgtatctcttgaatattctacaaaaaatttaaataaattaattacaatttaat |
175 |
Q |
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| T |
38316543 |
actctaaaacctatatctaactaagaactatcatattttattagtagcgtatctcttgaatattctacaaaaaatttaaataaattaattacaatttaat |
38316642 |
T |
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| Q |
176 |
gtacaaattgtgtatacaagataaatatttgtcatcgatcaattagctaaaaga-tggtcattttgtttggatgttttaaaacgtacggag |
265 |
Q |
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| T |
38316643 |
gtacaaattgtgtatatgagataaatatttgtcatcgatcaattagctaaaagattggtcattttgtttggatgttttaaaacgaacggag |
38316733 |
T |
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Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 38316900 - 38316982
Alignment:
| Q |
267 |
aaactacaaaactatgaatcaaatttgagatctatttgatgatattatgcctgtaccatattttccaacattatcatatgatg |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||| |
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| T |
38316900 |
aaactacaaaactatgaatcaaatttgagatctatttgatgatatcatgcttgtaccatattttccaatattatcatatgatg |
38316982 |
T |
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