View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6584_high_1 (Length: 564)
Name: NF6584_high_1
Description: NF6584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6584_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 220 - 549
Target Start/End: Original strand, 4148003 - 4148333
Alignment:
| Q |
220 |
cactcattccttcttctttcttgcatccgcccaaatcagaaacaccagatctcaatctctaggaattatttttctactgactgcaaatttactaggaatt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4148003 |
cactcattccttcttctttcttgcatccgcccaaatcagaaacaccagatctcaatctctaggaattatttttctactgactgcaaatttactaggaatt |
4148102 |
T |
|
| Q |
320 |
atttctctaacaaattgatctcataatccat-tttccctcaatttagtaggtattctgcagtatatttctagctaaattcgtttgctagtcaacaacaaa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4148103 |
atttctctaacaaattgatctcataatccatgtttccctcaatttagtaggtattctgcagtatatttctagctaaattcgtttgctagtcaacaacaaa |
4148202 |
T |
|
| Q |
419 |
ttagctacaaatattgtcgtagcaaactgcatattatcttgtagtgcatttgatggatatccatataatgtgtaaatcggacaaagtcaaccatttagaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4148203 |
ttagctacaaatattgtcgtagcaaactgcatattatcttgtagtgcatttgatggatatccatatcatgtgtaaatcggacaaagtcaaccatttagaa |
4148302 |
T |
|
| Q |
519 |
ttaattaatttatcagcatacagaagcaaac |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4148303 |
ttaattaatttatcagcatacagaagcaaac |
4148333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 31068977 - 31069137
Alignment:
| Q |
1 |
atttgatgttgaagcgccgcttcagccagcaaattgtatttcttcttaattataaaaaattatcttcttcatttgttcattaatcttcttcatcatcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31068977 |
atttgatgttgaagcgccgcttcagccagcaaattgtatttcttcttaattataaaaaattatcttcttcatttgttcattaatcttcttcatcatcacc |
31069076 |
T |
|
| Q |
101 |
atttacccaaatctcaccccttttcattaaaaatccttttcaacccatttgttataatttc |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31069077 |
atttacccaaatctcaccccttttcattaaaaacccttttcaacccatttgttataatttc |
31069137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 5305335 - 5305287
Alignment:
| Q |
415 |
caaattagctacaaatattgtcgtagcaaactgcatattatcttgtagt |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
5305335 |
caaattagctacaaatattgtcgtagcaaatcacatattttcttgtagt |
5305287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 388 - 464
Target Start/End: Complemental strand, 3081433 - 3081354
Alignment:
| Q |
388 |
tagctaaattcgtttgctag---tcaacaacaaattagctacaaatattgtcgtagcaaactgcatattatcttgtagtg |
464 |
Q |
| |
|
|||| ||||||||||||||| | ||| ||| ||||||||||||||| ||||||||||| ||||||| |||||||||| |
|
|
| T |
3081433 |
tagccaaattcgtttgctagaaattaactacatattagctacaaatatggtcgtagcaaatcgcatattttcttgtagtg |
3081354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University