View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6584_low_3 (Length: 292)
Name: NF6584_low_3
Description: NF6584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6584_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 105 - 281
Target Start/End: Complemental strand, 22674188 - 22674012
Alignment:
| Q |
105 |
catctttaaaacgtttttaaaagtgtaattattctgctgcattctttctcaaaatttcatgagaaaatttcattgaagcaatcttcaacattttcctact |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22674188 |
catctttaaaacgtttttaaaagtgtaattattctgctgcattctttctcaaaatttcatgagaaaatttcattgaagcaatctacaacattttcctact |
22674089 |
T |
|
| Q |
205 |
ttgttttttccttgaagactcgctttttaaatccccaagaaataaatatttttatttcctttttcaatttctgatga |
281 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
22674088 |
ttgtttcttccttgaagactccttttttaaatctccaagaaataaatattttcatttcctttttcaatttctaatga |
22674012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 37865090 - 37865136
Alignment:
| Q |
164 |
tgagaaaatttcattgaagcaatcttcaacattttcctactttgttt |
210 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| | ||||||||| |
|
|
| T |
37865090 |
tgagaaaatttcattgaagcaatcttcgacctttttccactttgttt |
37865136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University