View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6585_high_2 (Length: 359)
Name: NF6585_high_2
Description: NF6585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6585_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 49654439 - 49654787
Alignment:
| Q |
1 |
gagtggtcaaagtggcggaggagattctggtaagaagaagatgaagaaaactcagagtggaactggaagcaatgggttgagttcagcatctactggtgca |
100 |
Q |
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| T |
49654439 |
gagtggtcaaagtggcggaggagattctggtaagaagaagatgaagaaaactcagagtggaactggaagcaatgggttgagttcagcatctaccggtgca |
49654538 |
T |
|
| Q |
101 |
cctgcagacactggagcagaattccagtgtccaggtcaggttgtggggcaagtgaatctcagccctacacgtcagcaatcgtacatgttgtatccagaaa |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654539 |
cctgcacacactggagcagaattccagtgtccaggtcaggttgtggggcaagtgaatctcagccctacacgtcagcaatcgtacatgttgtatccagaaa |
49654638 |
T |
|
| Q |
201 |
catgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttactatgttccaccattaccctacat |
300 |
Q |
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| T |
49654639 |
catgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttactatgttccaccattaccctacat |
49654738 |
T |
|
| Q |
301 |
gtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
349 |
Q |
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| T |
49654739 |
gtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
49654787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 178 - 349
Target Start/End: Original strand, 16486263 - 16486434
Alignment:
| Q |
178 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
277 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
16486263 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
16486362 |
T |
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| Q |
278 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
349 |
Q |
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||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16486363 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttg |
16486434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 178 - 349
Target Start/End: Complemental strand, 21816647 - 21816476
Alignment:
| Q |
178 |
atcgtacatgttgtatccagaaacatgttatcctcctttggtacaatatgcaacttacaacagattatgtcccatgggaacaatgggttgtccttcttac |
277 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
21816647 |
atcgtacatgttgtatgcagaaacatgttatcctcctttggtacaatatgtaacttacaacagattaggtcccattcgaacaatgggttgtccttcttac |
21816548 |
T |
|
| Q |
278 |
tatgttccaccattaccctacatgtgtgcaggccttgatcgtgacccttatcagtttcaatctacacctttg |
349 |
Q |
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||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21816547 |
tatgttccaccattaccctgcatgtgtacaggctttgatcgtgacccttatcagtttcaatctacacctttg |
21816476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 180
Target Start/End: Complemental strand, 14381479 - 14381448
Alignment:
| Q |
149 |
caagtgaatctcagccctacacgtcagcaatc |
180 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14381479 |
caagtgaatctcagccctacacgtcagcaatc |
14381448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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