View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6585_high_3 (Length: 355)
Name: NF6585_high_3
Description: NF6585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6585_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 346
Target Start/End: Original strand, 2599081 - 2599407
Alignment:
| Q |
20 |
agaaattccattacagcacccgatacaacctcctgtaccacctttggagaaatagcaccttgtgacggtgtaaaaatcaggataacaaccctttgttgta |
119 |
Q |
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|||||||| |||| ||||| |||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||| || |
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| T |
2599081 |
agaaattctattaaagcacacgatacaacctcctgtaccacctttggagaaataacaccttatgacgatgtaaaaatcactataacaaccctttgtttta |
2599180 |
T |
|
| Q |
120 |
tagaaataaccacatcgatcctaccagagcactaacatgctccaccaccttaagcatagccaacttctggatatttactaggatgttcctacttacaagg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2599181 |
tagaaataaccacatcgatcctaccagagcactaacatgctccaccaccttaagcatagccaacttctggatatttactaggatgttcctacttacaagg |
2599280 |
T |
|
| Q |
220 |
atatcatctgaaccaaatagacttctatgtctatcatgggtttggttacaataaaaaacattcatatatgcattgactcgtccctactaacagggaagtc |
319 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2599281 |
atatcatctgaactgaatagacttctatgtctatcacgggtttggttacaataaaaaacattcatatatgcattgactcgtccctactaacagggaagtc |
2599380 |
T |
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| Q |
320 |
tcttaaaacagattggtctcttcttct |
346 |
Q |
| |
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||||||| ||||||||||||||||||| |
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| T |
2599381 |
tcttaaatcagattggtctcttcttct |
2599407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 346
Target Start/End: Original strand, 2605784 - 2606103
Alignment:
| Q |
20 |
agaaattccattacagcacccgatacaacctcctgtaccaccttt-ggagaaatagcaccttgtgacggtgtaaaaatcaggataacaaccctttgttgt |
118 |
Q |
| |
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|||| |||||||| ||||| ||||||||||| |||||||||||| || ||||||| ||||| ||| ||| ||||| ||||||||||||||||||||| |
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| T |
2605784 |
agaatttccattaaagcacacgatacaaccttatgtaccaccttttggtgaaatagtaccttcaaacgatgtgaaaattaggataacaaccctttgttgt |
2605883 |
T |
|
| Q |
119 |
atagaaataaccacatcgatcctaccagagcactaacatgctccaccaccttaagcatagccaacttctggatatttactaggatgttcctacttacaag |
218 |
Q |
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||| || |||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2605884 |
atatcaaaaaccacctcaatcctaccatagcactaacatgctccacca---------tagccaacttctggatatttactaggatgttcctacttacaag |
2605974 |
T |
|
| Q |
219 |
gatatcatctgaaccaaatagacttctatgtctatcatgggtttggttacaataa-aaaacattcatatatgcattgactcgtccctactaacagggaag |
317 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||||| |||||||||| ||||||| |
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| T |
2605975 |
gatatcatctgaaccgaatagacttctatgtctatcacgggtttggttacattaatcaaacattcatataggcattgactcatccctactaagagggaag |
2606074 |
T |
|
| Q |
318 |
tctcttaaaacagattggtctcttcttct |
346 |
Q |
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|| |||||| ||||||||||||||||||| |
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| T |
2606075 |
tcacttaaatcagattggtctcttcttct |
2606103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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