View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6585_low_4 (Length: 235)
Name: NF6585_low_4
Description: NF6585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6585_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41747137 - 41747358
Alignment:
| Q |
1 |
ggaaattgttccaatagaatgaaagccctggcttatcacatacactatatttctttgctcctttctcatcgacacttccacaataataacttgaactcac |
100 |
Q |
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| T |
41747137 |
ggaaattgttccaatagaatgaaagccctggtttatcacatacactatatttctttgctcctttctcatcgacacttccacaataataacttgaactcac |
41747236 |
T |
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| Q |
101 |
tcccacacaacatggttgcaatggattcatcaatgttgagtttgctgcataatggagaaaagttattaggtgcaaaagttagttatactaattaattagt |
200 |
Q |
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| T |
41747237 |
tcccacacaacatggttgcaatggattcatcaatgttgagtttgctgcataatggagaaaagttattaggtgcaaaagttagttatactaattaattagt |
41747336 |
T |
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| Q |
201 |
taagttcgttagttcgttgttc |
222 |
Q |
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| T |
41747337 |
taagttcgttagttcgttgttc |
41747358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 41753509 - 41753647
Alignment:
| Q |
11 |
ccaatagaatgaaagccctggcttatcacatacactatatttctttgctcctttctcatcgacacttccacaataataacttgaactcactcccacacaa |
110 |
Q |
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| T |
41753509 |
ccaaaagaatgaaagctctggtttctcacatacactatatttcttttctcctttatcatccacacttccacaattatttttcaaaccatctcccacacaa |
41753608 |
T |
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| Q |
111 |
catggttgcaatggattcatcaatgttgagtttgctgca |
149 |
Q |
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| T |
41753609 |
cacgctttcaatggattcatcagtgttgagttttctgca |
41753647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 41732503 - 41732615
Alignment:
| Q |
31 |
gcttatcacatacactatatttctttgctcctttctcatcgacacttccacaataataacttgaactcactcccacacaacatggttgcaatggattcat |
130 |
Q |
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| T |
41732503 |
gcttctcacatacactatatttccttgctcctttattatcaacacttccacaaaaatatttcaaatcctctcccttacaacacggttgcaacggattcat |
41732602 |
T |
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| Q |
131 |
caatgttgagttt |
143 |
Q |
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| T |
41732603 |
cactgttgagttt |
41732615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 41738618 - 41738650
Alignment:
| Q |
100 |
ctcccacacaacatggttgcaatggattcatca |
132 |
Q |
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| T |
41738618 |
ctcccacacaacatggttgcaacggattcatca |
41738650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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