View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6586_high_2 (Length: 228)

Name: NF6586_high_2
Description: NF6586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6586_high_2
NF6586_high_2
[»] chr5 (2 HSPs)
chr5 (1-109)||(8205322-8205429)
chr5 (38-103)||(8225180-8225244)
[»] chr7 (2 HSPs)
chr7 (1-109)||(38369291-38369398)
chr7 (194-224)||(30056181-30056211)
[»] chr2 (2 HSPs)
chr2 (1-92)||(31569885-31569976)
chr2 (30-92)||(11739096-11739158)
[»] chr8 (4 HSPs)
chr8 (1-109)||(2822857-2822962)
chr8 (1-103)||(9635661-9635762)
chr8 (29-88)||(43326061-43326120)
chr8 (1-103)||(9578797-9578898)
[»] chr1 (1 HSPs)
chr1 (1-109)||(44828050-44828155)
[»] scaffold0380 (1 HSPs)
scaffold0380 (5-92)||(602-689)
[»] chr3 (2 HSPs)
chr3 (29-92)||(18370431-18370494)
chr3 (5-92)||(29109798-29109885)


Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 8205429 - 8205322
Alignment:
Q  1 tctccttccctttcttctcaactttggagagaaaggattttgtgtggggtccacatatttttggtctctctcccctatttctcttcactacccaaacagg 100  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  8205429 tctccttcactttcttctcaactttggagagaaaggattttatgtggggtccacatgtttttagtctctctcccctatttctcttcacta-ccaaacagg 8205331  T
Q  101 agagcttca 109  Q
    ||| |||||    
T  8205330 agaacttca 8205322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 8225180 - 8225244
Alignment:
Q  38 ttttgtgtggggtccacatatttttggtctctctcccctatttctcttcactacccaaacaggaga 103  Q
    |||| ||||||| |||||  ||||| ||||||||||||||||||||||||||| ||||||||||||    
T  8225180 ttttttgtggggcccacagctttttagtctctctcccctatttctcttcacta-ccaaacaggaga 8225244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 38369398 - 38369291
Alignment:
Q  1 tctccttccctttcttctcaactttggagagaaaggattttgtgtggggtccacatatttttggtctctctcccctatttctcttcactacccaaacagg 100  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |||    
T  38369398 tctccttcactttcttctcaactttggagagaaaggattttatgtggggtccacatgtttttagtctctctcccctatttctcttcacta-ccaaatagg 38369300  T
Q  101 agagcttca 109  Q
    ||| |||||    
T  38369299 agaacttca 38369291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 224
Target Start/End: Original strand, 30056181 - 30056211
Alignment:
Q  194 ttgttgatatttgggtaagaagcatccatcg 224  Q
    |||||||||||||||||||||||||||||||    
T  30056181 ttgttgatatttgggtaagaagcatccatcg 30056211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 31569976 - 31569885
Alignment:
Q  1 tctccttccctttcttctcaactttggagagaaaggattttgtgtggggtccacatatttttggtctctctcccctatttctcttcactacc 92  Q
    |||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  31569976 tctccttcactttcttctcaactttggagagaaaagattttatgtggggtccacatgtttttagtctctctcccctatttctcttcactacc 31569885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 11739096 - 11739158
Alignment:
Q  30 agaaaggattttgtgtggggtccacatatttttggtctctctcccctatttctcttcactacc 92  Q
    |||||| ||||||||||||  |||||   |||| | |||||||||||||||||||||||||||    
T  11739096 agaaagaattttgtgtgggacccacaatattttagcctctctcccctatttctcttcactacc 11739158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 2822857 - 2822962
Alignment:
Q  1 tctccttccctttcttctcaactttggagagaaaggattttgtgtggggtccacatatttttggtctctctcccctatttctcttcactacccaaacagg 100  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||  ||||||||||||||||| |||| ||||    
T  2822857 tctccttcactttcttcttaactttggagagaaagggttttgtgtggggtccacatatttttagtctctct--cctatttctcttcacta-ccaaccagg 2822953  T
Q  101 agagcttca 109  Q
    ||| |||||    
T  2822954 agaacttca 2822962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 9635762 - 9635661
Alignment:
Q  1 tctccttccctttcttctcaactttggagagaaaggattttgtgtggggtccacatatttttggtctctctcccctatttctcttcactacccaaacagg 100  Q
    ||||||||  ||||||||||| | ||| ||||||| || |||||||||  |||||  ||||| ||||||||||||| ||||||||| ||| |||||||||    
T  9635762 tctccttctatttcttctcaattatggggagaaagaatattgtgtgggacccacagctttttagtctctctcccctgtttctcttctcta-ccaaacagg 9635664  T
Q  101 aga 103  Q
    |||    
T  9635663 aga 9635661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 43326061 - 43326120
Alignment:
Q  29 gagaaaggattttgtgtggggtccacatatttttggtctctctcccctatttctcttcac 88  Q
    ||||||| ||||||||||||  |||||  ||||| ||||||||||| |||||||||||||    
T  43326061 gagaaagaattttgtgtgggacccacaactttttagtctctctcccttatttctcttcac 43326120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 9578898 - 9578797
Alignment:
Q  1 tctccttccctttcttctcaactttggagagaaaggattttgtgtggggtccacatatttttggtctctctcccctatttctcttcactacccaaacagg 100  Q
    ||||||||  ||||||||||  ||||  ||||||| |||||| ||||| |||| |  ||||| | |||||| ||||||||||||||||||  ||||||||    
T  9578898 tctccttctatttcttctcagttttgaggagaaagaattttgcgtgggatccataactttttagcctctcttccctatttctcttcacta-tcaaacagg 9578800  T
Q  101 aga 103  Q
    |||    
T  9578799 aga 9578797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 44828050 - 44828155
Alignment:
Q  1 tctccttccctttcttctcaactttggagagaaaggattttgtgtggggtccacatatttttggtctctctcccctatttctcttcactacccaaacagg 100  Q
    |||||||| |||||||||| ||||||||||||||||||||  |||||||||||||||||||| ||||||||   ||||||||||| |||  |||||||||    
T  44828050 tctccttcactttcttctcgactttggagagaaaggattt--tgtggggtccacatatttttagtctctcttttctatttctctttact-tccaaacagg 44828146  T
Q  101 agagcttca 109  Q
    ||| |||||    
T  44828147 agaacttca 44828155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 602 - 689
Alignment:
Q  5 cttccctttcttctcaactttggagagaaaggattttgtgtggggtccacatatttttggtctctctcccctatttctcttcactacc 92  Q
    ||||| ||||||||||  ||||| ||||||| ||||||||||||  ||| || |||||  ||||||| | ||||||||||||||||||    
T  602 cttccatttcttctcacttttggggagaaagaattttgtgtgggacccatatgtttttaatctctcttctctatttctcttcactacc 689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 18370494 - 18370431
Alignment:
Q  29 gagaaaggattttgtgtggggtccacatatttttggtctctctcccctatttctcttcactacc 92  Q
    ||||||| ||||||||||||  |||||| ||||| ||||| ||||||| ||||||||| |||||    
T  18370494 gagaaagaattttgtgtgggacccacatctttttagtctcactcccctgtttctcttctctacc 18370431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 29109798 - 29109885
Alignment:
Q  5 cttccctttcttctcaactttggagagaaaggattttgtgtggggtccacatatttttggtctctctcccctatttctcttcactacc 92  Q
    ||||| ||||||||||  | ||| ||||||| ||||||||||||  ||| || |||||  ||||||| | ||||||||||||||||||    
T  29109798 cttccatttcttctcacttgtggggagaaagaattttgtgtgggacccatatgtttttaatctctcttctctatttctcttcactacc 29109885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University