View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6586_low_3 (Length: 206)
Name: NF6586_low_3
Description: NF6586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6586_low_3 |
 | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0061 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 53019 - 53194
Alignment:
| Q |
15 |
caaagggcgttcaagaactaatatcaagtactattgaagaatccactatgaagaacatttgaaaactcatcataaagatcatatcaaatatcatatctcc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53019 |
caaagggcgttcaagaactaatatcaagtactattgaagaatctactatgaagaacatttaaaaactcatcataaagatcatatcaaatatcatatctcc |
53118 |
T |
|
| Q |
115 |
tatctcgggaaggtgctcattgaaactaagtttatttaagggataaaaactataagaatgagtctcgagttctttt |
190 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
53119 |
tatctcgggaaggtgctcattgaatttaagtttatttaagatataaaaactataagaatgagtctcgagttctttt |
53194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 145615 - 145440
Alignment:
| Q |
15 |
caaagggcgttcaagaactaatatcaagtactattgaagaatccactatgaagaacatttgaaaactcatcataaagatcatatcaaatatcatatctcc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
145615 |
caaagggcgttcaagaactaatatcaagtactattgaagaatctactatgaagaacatttaaaaactcatcataaagatcatatcaaatatcatatctcc |
145516 |
T |
|
| Q |
115 |
tatctcgggaaggtgctcattgaaactaagtttatttaagggataaaaactataagaatgagtctcgagttctttt |
190 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
145515 |
tatctcgggaaggtgctcattgaatttaagtttatttaagatataaaaactataagaatgagtctcgagttctttt |
145440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 40649055 - 40648906
Alignment:
| Q |
41 |
agtactattgaagaatccactatgaagaacatttgaaaactcatcataaagatcatatcaaatatcatatctcctatctcgggaaggtgctcattgaaac |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40649055 |
agtactattgaagaatccactatgaagaacatttgaaaactcatcataaagatcatatcaaatatcatatctcctatctcgggaaggtgctcattgaaac |
40648956 |
T |
|
| Q |
141 |
taagtttatttaagggataaaaactataagaatgagtctcgagttctttt |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40648955 |
taagtttatttaagggataaaaactataagaatgagtctcgagttctttt |
40648906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 46
Target Start/End: Complemental strand, 40649363 - 40649332
Alignment:
| Q |
15 |
caaagggcgttcaagaactaatatcaagtact |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
40649363 |
caaagggcgttcaagaactaatatcaagtact |
40649332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 25060513 - 25060684
Alignment:
| Q |
15 |
caaagggcgttcaagaactaatatca---agtactattgaagaatccactatgaagaacatttgaaaactcatcataaagatcatatcaaatatcatatc |
111 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||| |
|
|
| T |
25060513 |
caaagggtgttcaagaactaatatcatcaagtactattgaagaatccactatgaagaacatttgaaaactcgtcataaaaat-------tatatcatatc |
25060605 |
T |
|
| Q |
112 |
tcctatctcgggaaggtgctcattgaaactaagtttatttaagggataaaaactataagaatgagtctcgagttctttt |
190 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||| ||||| ||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
25060606 |
tcctatctcgaaaaggtgctcattaaaactaagttcatttataggatataaattataagaatgagtctcgagttctttt |
25060684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 17578784 - 17578686
Alignment:
| Q |
16 |
aaagggcgttcaagaactaatatcaa-gtactattgaagaatccactatgaagaacatttgaaaactcatcataaagatcatatcaaatatcatatctc |
113 |
Q |
| |
|
|||||| |||||||||||||||| || |||| |||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
17578784 |
aaagggtgttcaagaactaatataaaagtaccattgaagaatccactatgaagaacatttcaaaactcatcataaaaattatatcaaatatcatatctc |
17578686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 38624398 - 38624572
Alignment:
| Q |
15 |
caaagggcgttcaagaactaatatcaagtactattgaagaatccactatgaagaacatttgaaaactcatcataaagatcatatcaaatatcatatctcc |
114 |
Q |
| |
|
||||||| ||| || |||||||||||| || ||||||||||||| ||||||||||| ||||||| |||||| ||||| || |||| ||||||||||| |
|
|
| T |
38624398 |
caaagggtgtttaaaaactaatatcaaacaccattgaagaatccattatgaagaaca-ttgaaaaatcatcaagaagattatgtcaattatcatatctct |
38624496 |
T |
|
| Q |
115 |
tatctcgggaaggtgctcattgaaactaagtttatttaagggataaaaactataagaatgagtctcgagttctttt |
190 |
Q |
| |
|
|||| | | |||||||||||||| |||||| |||| | || || |||||| ||||||||||| ||||||||| |
|
|
| T |
38624497 |
tatcatagaatggtgctcattgaaattaagttcatttgtgagacaataactattagaatgagtcttaagttctttt |
38624572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 51163313 - 51163208
Alignment:
| Q |
15 |
caaagggcgttcaagaactaatatcaagtactattgaagaatccactatgaagaacatttgaaaactcatcataaagatcatatcaaatatcatatctcc |
114 |
Q |
| |
|
||||||||||| |||||||||||| ||| |||||||||||||||| ||| ||||| |||||||||||||||| |||||| || ||||||| ||||||||| |
|
|
| T |
51163313 |
caaagggcgtttaagaactaatattaagcactattgaagaatccattattaagaatatttgaaaactcatcagaaagataatgtcaaatagcatatctcc |
51163214 |
T |
|
| Q |
115 |
tatctc |
120 |
Q |
| |
|
|||||| |
|
|
| T |
51163213 |
tatctc |
51163208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 38232521 - 38232352
Alignment:
| Q |
15 |
caaagggcgttcaagaactaatatcaa-gta-ctattgaagaatccactatgaagaacatttgaaaactcatcataaagatcatatcaaatatcatatct |
112 |
Q |
| |
|
||||||| ||||||||||||| || || ||| | ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38232521 |
caaagggtgttcaagaactaacataaaagtaaccattgaagaatccaatatgaagaacatttcaaaactcatcataaagattatatcaaatatcatatct |
38232422 |
T |
|
| Q |
113 |
cctatctcgggaaggtgctcattgaaactaagtttatttaagggataaaaactataagaatgagtctcgagttcttt |
189 |
Q |
| |
|
| | ||||||||||||||||||||||| || || |||| ||||| ||| | || ||| ||| |||||||| |
|
|
| T |
38232421 |
caaa-------aaggtgctcattgaaactaagttcatgtatgggacaaaaattattataacgagactcaagttcttt |
38232352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University