View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6587_low_1 (Length: 529)
Name: NF6587_low_1
Description: NF6587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6587_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 164 - 513
Target Start/End: Complemental strand, 15039138 - 15038789
Alignment:
| Q |
164 |
tttgttgtgtaggtagatctggtagtaaaataatttgtaggctacctttcatgaataaaaatttgtaggttgcttggatccttggttttaggtcaaaaca |
263 |
Q |
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| T |
15039138 |
tttgttgtgtaagtagatctggtagtaaaataatttgtaggctacctttcatgaataaaaatttgtaggttacttggatccttggttttaggtcaacaca |
15039039 |
T |
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| Q |
264 |
aaataatgcaatttagcataatgtgataataaaatttgaaatgttgtgtattggaacatgtagtgaatgttgaagttcttaattggtcaatgagcatgtg |
363 |
Q |
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| T |
15039038 |
aaataatgcaatttagcataatgtgatgataaaatttgaaatgttgtgtatttgaacatgtagtgaatgttgaagttcttaattggtcaatgagcatgtg |
15038939 |
T |
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| Q |
364 |
atgtttaattgcaggctaagccagatatgagtctctatagtgcaaagcgaaaagcggtgacacaagatgttcctagcgacgagccttctgcaattggttt |
463 |
Q |
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| T |
15038938 |
atgtttaattgcaggctaagccagatatgagtctctatagtgcaaagcgaaaagcggtgacacaagatgttcctagcgatgagccttctgcaattggttt |
15038839 |
T |
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| Q |
464 |
gaacaaaaagctgaaggaggagtggagttgtgaactgtgtcagattaatg |
513 |
Q |
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| T |
15038838 |
gaacaaaaagctgaaggaggagtggagttgtgaactgtgtcggattaatg |
15038789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 15039302 - 15039164
Alignment:
| Q |
25 |
ataagaaacatttaaggagatggatagtgcttcggtctaaggtaaatgaacacattattcagcattttttcacaatatatcattgcattgtgtcacacgc |
124 |
Q |
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| T |
15039302 |
ataagaaacatttaaggagatgaatagtcc---ggtctaaggtaaatgaacacattattcagcattttttcacactatatcattgcattgtgtctcaccc |
15039206 |
T |
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| Q |
125 |
aagaaaatcaaacatgctaacttaagcatttatacatatttt |
166 |
Q |
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| T |
15039205 |
aagaaaatcaaacatgctaacttaagcatttatacatatttt |
15039164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 280 - 511
Target Start/End: Original strand, 54058317 - 54058565
Alignment:
| Q |
280 |
cataatgtgataataaaatttgaaatgttgtgtattggaacatgtagtgaatgttgaagttcttaattggtcaatgagcatgtgatgttt---------- |
369 |
Q |
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| T |
54058317 |
cataatgtgatgataaaatttgaaatgtagtgtatttgaacaagtagtgaatgtttaagttcttaattggtcagtgagcatgtgatgttttatctgagta |
54058416 |
T |
|
| Q |
370 |
----aattgcaggctaagccagatatgagtctctatagtgcaaagcgaaaagcggtgacacaagat---gttcctagcgacgagccttctgcaattggtt |
462 |
Q |
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|||| |||||||||||||| | ||||| ||||||||||||||||||| |||||||| ||| |||| | ||||||||||||||||||||||| |
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| T |
54058417 |
tcctaattacaggctaagccagaccttggtctcgatagtgcaaagcgaaaagcagtgacacatgatattgttcttgacgacgagccttctgcaattggtt |
54058516 |
T |
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| Q |
463 |
tgaacaaaaagctgaaggaggagtggagttgtgaactgtgtcagattaa |
511 |
Q |
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| T |
54058517 |
cgaacaaaaagctgaagaaagagtggagttgtgaactgtgtcagattaa |
54058565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 281 - 340
Target Start/End: Original strand, 54459389 - 54459448
Alignment:
| Q |
281 |
ataatgtgataataaaatttgaaatgttgtgtattggaacatgtagtgaatgttgaagtt |
340 |
Q |
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| T |
54459389 |
ataacgtgatagtaaaatttgaaatgttgtgtatttgaatatgtagtgaatgttgaagtt |
54459448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 511
Target Start/End: Original strand, 54459504 - 54459620
Alignment:
| Q |
395 |
tctctatagtgcaaagcgaaaagcggtgacacaagatgttcctagcgacgagccttctgcaattggtttgaacaaaaagctgaaggaggagtggagttgt |
494 |
Q |
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||||||| |||||||||||||||| |||||| |||| ||||| || || |||| |||||||||| |||| ||||| | ||||| |||||||||||| |
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| T |
54459504 |
tctctatggtgcaaagcgaaaagcattgacacttgatgctcctaatgatgatccttatgcaattggtatgaagaaaaaaccaaaggaagagtggagttgt |
54459603 |
T |
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| Q |
495 |
gaactgtgtcagattaa |
511 |
Q |
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| T |
54459604 |
gaactgtgccaaattaa |
54459620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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