View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6587_low_2 (Length: 442)
Name: NF6587_low_2
Description: NF6587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6587_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 45970261 - 45969851
Alignment:
| Q |
18 |
attcttagggtcgctgccggtaactaaacgccattcatcatgctccagagcaggatagcatatcttaagaggcatttgaccaacaagatcgtcccatttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45970261 |
attcttagggtcgctgccggtaactaaacgccattcatcatgctccagagcaggatagcatatcttaagaggcatttgaccaacaagatcgtcccatttt |
45970162 |
T |
|
| Q |
118 |
gattctattagattcaaaacagacttgttctgtcttggtgtacctaaagatgaaacaatagaccaaagatttccaagcatgaaaaacctgaaatccatgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45970161 |
gattctattagattcaaaacagacttgttctgtcttggtgtacctaaagatgaaacaatagaccaaagatttccaagcatgaaaaacctgaaatccatgt |
45970062 |
T |
|
| Q |
218 |
gagctggttgtaaatttcctatcaaataaccaccttcatctggaatccaatccattaaccacattggaatttgttccggatagatgttgaacttgttagt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45970061 |
gagctggttgtaaatttcctatcaaataaccaccttcttctggaatccaatccattaaccacattggaatttgttccggatagatgttgaacttgttagt |
45969962 |
T |
|
| Q |
318 |
tgcatctaaagagtactcttctgttttatacctatatatttcattcacttttctcatatccaaccaataatactctctaatatggaaggacaatgcactt |
417 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45969961 |
tgcatctaaagagtactcttctgttttatacctgtatatttcattcacttttctcatatccaaccaataatactctctaatatggaaggacaatgcactt |
45969862 |
T |
|
| Q |
418 |
agtctgttgtt |
428 |
Q |
| |
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||||||||||| |
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| T |
45969861 |
agtctgttgtt |
45969851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 37652621 - 37653031
Alignment:
| Q |
18 |
attcttagggtcgctgccggtaactaaacgccattcatcatgctccagagcaggatagcatatcttaagaggcatttgaccaacaagatcgtcccatttt |
117 |
Q |
| |
|
|||||| ||||||||||| |||| || ||||| || |||| |||| |||||||| ||||||||||||||||| || || ||||| |||||||||||| |
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| T |
37652621 |
attctttgggtcgctgccagtaattatccgccactcttcattatccaaggcaggataacatatcttaagaggcatatgccccacaagttcgtcccatttt |
37652720 |
T |
|
| Q |
118 |
gattctattagattcaaaacagacttgttctgtcttggtgtacctaaagatgaaacaatagaccaaagatttccaagcatgaaaaacctgaaatccatgt |
217 |
Q |
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| |||||| |||||||||| || || |||||||||||| || | | |||||||| ||| ||||||||||||||||| ||||||||| ||||||||||| |
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| T |
37652721 |
gcttctatcagattcaaaatagcctcgttctgtcttggagtgctcagagatgaaataatggaccaaagatttccaagtgtgaaaaaccggaaatccatgt |
37652820 |
T |
|
| Q |
218 |
gagctggttgtaaatttcctatcaaataaccaccttcatctggaatccaatccattaaccacattggaatttgttccggatagatgttgaacttgttagt |
317 |
Q |
| |
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|||||||||||| |||||| || | ||| ||||||| || |||||||||||||||| ||| | ||||||||||| |||||||||||||| ||||| | |
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| T |
37652821 |
gagctggttgtagatttccaattagatatccacctttttcaggaatccaatccattacccagaaaggaatttgttcaggatagatgttgaatttgttgat |
37652920 |
T |
|
| Q |
318 |
tgcatctaaagagtactcttctgttttatacctatatatttcattcacttttctcatatccaaccaataatactctctaatatggaaggacaatgcactt |
417 |
Q |
| |
|
||||| | |||||||||||||| || || |||||||||||||| | ||| ||||||||| ||||||||| | |||||| ||||| || | |||||| |
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|
| T |
37652921 |
ggcatccatggagtactcttctgtgttgtatctatatatttcattaatctttttcatatccacccaataatattgtctaatgtggaacgatagtgcactc |
37653020 |
T |
|
| Q |
418 |
agtctgttgtt |
428 |
Q |
| |
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||||||||||| |
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|
| T |
37653021 |
agtctgttgtt |
37653031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 254
Target Start/End: Complemental strand, 4319241 - 4319057
Alignment:
| Q |
70 |
ggatagcatatcttaagaggcatttgaccaacaagatcgtcccattttgattctattagattcaaaacagacttgttctgtcttggtgtacctaaagatg |
169 |
Q |
| |
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||||| ||||| || |||||||||||||||| | ||| |||||||| | ||||||| |||||||| || || ||||||| ||| |||||||| | |
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| T |
4319241 |
ggataacatattttgagaggcatttgaccaatgatatcatcccatttggcgtctattaaattcaaaatgccctcattttgtcttgttgtgcctaaagaag |
4319142 |
T |
|
| Q |
170 |
aaacaatagaccaaagatttccaagcatgaaaaacctgaaatccatgtgagctggttgtaaatttcctatcaaataaccaccttc |
254 |
Q |
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| ||||| | |||||| ||||| || ||||||||||||| ||||| ||||| ||||| | ||| ||||| || || |||||||| |
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|
| T |
4319141 |
agacaatggcccaaaggtttccgagtgtgaaaaacctgaagtccatatgagcaggttgcagattgcctatgaagtatccaccttc |
4319057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 230
Target Start/End: Original strand, 38510610 - 38510641
Alignment:
| Q |
199 |
aaaaacctgaaatccatgtgagctggttgtaa |
230 |
Q |
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|||||||||||||||||||||||||||||||| |
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|
| T |
38510610 |
aaaaacctgaaatccatgtgagctggttgtaa |
38510641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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