View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6587_low_3 (Length: 388)
Name: NF6587_low_3
Description: NF6587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6587_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 1943475 - 1943669
Alignment:
| Q |
14 |
cataggaccagcataatcaccaggccaatgtccatcatgactctgaagagttgaatagaaattcaaagcccttcttaatgttgttgtcacactctcttca |
113 |
Q |
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| T |
1943475 |
cataggaccagcataatcaccaggccaatgtccatcatgactctgaagagttgaatagaaattcaaagcccttcttaatgttgttgtcacactctcttca |
1943574 |
T |
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| Q |
114 |
ttgacatcttcaacatctttcactctcactttgggtatcacttccttcatcggattctctttcgcaaactacataacaaatacaatacactgtca |
208 |
Q |
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| T |
1943575 |
ttgacatcttcaacatctttcactctcactttgggtatcacttccttcatcggattctctttcgcaaactacataacaaatacaatacactgtca |
1943669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 257 - 367
Target Start/End: Original strand, 1943721 - 1943831
Alignment:
| Q |
257 |
tgtcacctgaatgcgcataagaagatcatcgctgtgtttgtgggaaaagcgattattacgaaaattttgacgaacggattcgatatcggcgagatcttgt |
356 |
Q |
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| T |
1943721 |
tgtcacctgaatgcgcataagaagatcatcgctgtgtttgtgggagaagcgattattacgaaaattttgacgaacggattcgatatcggcgagatcttgt |
1943820 |
T |
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| Q |
357 |
ggcgatccgga |
367 |
Q |
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| T |
1943821 |
ggcgatccgga |
1943831 |
T |
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