View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6587_low_4 (Length: 369)

Name: NF6587_low_4
Description: NF6587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6587_low_4
NF6587_low_4
[»] chr5 (23 HSPs)
chr5 (10-365)||(30748857-30749212)
chr5 (10-365)||(30677702-30678057)
chr5 (10-357)||(29871400-29871747)
chr5 (10-357)||(30482618-30482965)
chr5 (10-352)||(30242919-30243261)
chr5 (10-365)||(30713956-30714323)
chr5 (10-365)||(30435036-30435391)
chr5 (10-357)||(30339067-30339414)
chr5 (10-357)||(30059571-30059930)
chr5 (10-342)||(30399279-30399623)
chr5 (10-244)||(17418824-17419058)
chr5 (67-239)||(29852570-29852742)
chr5 (268-365)||(29852783-29852880)
chr5 (63-141)||(4380925-4381003)
chr5 (279-364)||(30206008-30206093)
chr5 (273-365)||(17418691-17418783)
chr5 (198-242)||(30474774-30474818)
chr5 (65-239)||(30205782-30205956)
chr5 (269-339)||(17982400-17982470)
chr5 (198-231)||(30522299-30522332)
chr5 (198-231)||(30562639-30562672)
chr5 (201-234)||(30430351-30430384)
chr5 (269-346)||(30474854-30474931)
[»] chr4 (3 HSPs)
chr4 (10-365)||(20297125-20297492)
chr4 (269-340)||(13616084-13616155)
chr4 (269-313)||(52351439-52351483)
[»] chr7 (2 HSPs)
chr7 (10-225)||(26706546-26706761)
chr7 (268-345)||(26706816-26706893)
[»] chr1 (4 HSPs)
chr1 (269-359)||(7098897-7098987)
chr1 (269-346)||(7582272-7582349)
chr1 (198-235)||(7582395-7582432)
chr1 (198-246)||(7098814-7098862)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 365
Target Start/End: Original strand, 30748857 - 30749212
Alignment:
Q  10 catcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgca 109  Q
    ||||||||||||||||||||||||||| ||||  | ||||||| ||       ||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  30748857 catcatcatccaagtatttcagattattcataccatataatcttagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttgttgca 30748956  T
Q  110 aaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgag 209  Q
    ||    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  30748957 aatctcaagttcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgag 30749056  T
Q  210 tgaggttgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatca 309  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30749057 tgaggttgaagcacttcaagtacttgctcagcactaaccgtagattcctccttgtatacccatgacaagcataattcatgaaggtcttttttacccatca 30749156  T
Q  310 aattagccgcttcagcttcagataaactaccaacattgtttaatcctttgttactc 365  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  30749157 aattagccgcttcagcttcagataaactgccaacattgtttaatcctttgatactc 30749212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 365
Target Start/End: Complemental strand, 30678057 - 30677702
Alignment:
Q  10 catcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgca 109  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||       |||||||||||||||||| || ||||||||||||||| ||| |||||    
T  30678057 catcatcatccaagtatttcagattattcatacgagataatctcagtctttttagagatggtagtttaccacgtaacggaagccgcacaattttgttgca 30677958  T
Q  110 aaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgag 209  Q
          |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  30677957 ttcctcaagttcaagagaaattaaattactaagaataattatccaacttggtaacgataatctttcatagtaatttattgtcaagcatttgagatttgag 30677858  T
Q  210 tgaggttgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatca 309  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30677857 tgaggtttaagcacttcaagtacttgctcagcactaaccgtagattcctccttgtatccccatgacaagcataattcatgaaggtcttttttatccatca 30677758  T
Q  310 aattagccgcttcagcttcagataaactaccaacattgtttaatcctttgttactc 365  Q
    | ||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  30677757 atttagccgcttcagcttcagataaactagcaacattgtttaatcctttgatactc 30677702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 29871400 - 29871747
Alignment:
Q  10 catcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgca 109  Q
    ||||||||||||||||||||||||||| |||||||||||||  |||       ||||||||||||||||||||| |||||||||||||||  || |||||    
T  29871400 catcatcatccaagtatttcagattatccatataagataattccagtttttttagagatggtagtttaccaagtaacggaagccgcacaatcttgttgca 29871499  T
Q  110 aaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgag 209  Q
    |     ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  29871500 atcctcaagtttaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgag 29871599  T
Q  210 tgaggttgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatca 309  Q
    |||||||||||| |||| ||||||||||||||||| |   |||||||||  |   ||  ||||||||||||||||| |||||||||||||||||||||||    
T  29871600 tgaggttgaagctcttcgagtacttgctcagcactaattatagattcctgttgcgatatccatgacaagcataattgatgaaggtcttttttacccatca 29871699  T
Q  310 aattagccgcttcagcttcagataaactaccaacattgtttaatcctt 357  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  29871700 aattagccgcttcagcttcagataaactgccaacattgtttaatcctt 29871747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 30482618 - 30482965
Alignment:
Q  10 catcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgca 109  Q
    ||||||||||||||||||||||||||| |||||||||||||  |||       ||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  30482618 catcatcatccaagtatttcagattatccatataagataattccagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttgttgca 30482717  T
Q  110 aaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgag 209  Q
    |   | |||||||| | ||||||||||||||||||   |||||||||||||||||||||| ||||||| || ||||||||||||| ||||||||||||||    
T  30482718 attccgaagttcaagagaaattaaattactaagaaggcttatccaacttggtaacgataacccttcattgtaatttattgtcaagcatttgagatttgag 30482817  T
Q  210 tgaggttgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatca 309  Q
    |||||||||||| |||||||||||||||||||||| |   |||||||||  | | ||  |||||||||||||||||||||||||||||||||||||||||    
T  30482818 tgaggttgaagctcttcaagtacttgctcagcactaattatagattcctgttgggatatccatgacaagcataattcatgaaggtcttttttacccatca 30482917  T
Q  310 aattagccgcttcagcttcagataaactaccaacattgtttaatcctt 357  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||    
T  30482918 aattagccgcttcagcttcagataacctgccaacattgtttaatcctt 30482965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 10 - 352
Target Start/End: Complemental strand, 30243261 - 30242919
Alignment:
Q  10 catcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgca 109  Q
    ||||||||||||||||||||||||||| ||| |   |||||  |||       ||| ||||||||||||||||| ||||||||||||||| ||| |||||    
T  30243261 catcatcatccaagtatttcagattatccatttcgaataattccagtttttttagatatggtagtttaccaagtaacggaagccgcacaattttgttgca 30243162  T
Q  110 aaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgag 209  Q
    |   | |||||||| | |||||||||||||||||| |||||||||||||||||| |||||||| ||||||  | ||||| ||||| | ||||||||||||    
T  30243161 attccgaagttcaagagaaattaaattactaagaagaattatccaacttggtaaggataatccctcatagaaacttattttcaagcacttgagatttgag 30243062  T
Q  210 tgaggttgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatca 309  Q
    ||||||||||||||||||||||||||||||||||| |   ||||||| |  | | ||  |||||||||||||||||||||||||||||||||||||||||    
T  30243061 tgaggttgaagcacttcaagtacttgctcagcactaattatagattcatgttgggatatccatgacaagcataattcatgaaggtcttttttacccatca 30242962  T
Q  310 aattagccgcttcagcttcagataaactaccaacattgtttaa 352  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  30242961 aattagccgcttcagcttcagataaactgccaacattgtttaa 30242919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 10 - 365
Target Start/End: Complemental strand, 30714323 - 30713956
Alignment:
Q  10 catcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgca 109  Q
    |||||||||||||||||||||||||||  |||  | ||||||||||       ||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  30714323 catcatcatccaagtatttcagattattgataccatataatctcagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttcttgca 30714224  T
Q  110 aaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgag 209  Q
    |     |||| ||| | ||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||    
T  30714223 atggagaagtacaagagaaactaaattactaagaataattatccaacttggtaatgataatccttcatagtaatttattgtcaagcatttgagatttgag 30714124  T
Q  210 tgaggttgaagcacttcaagtacttgctcagcactgaccgtag-----------attcctt-cttgtatccccatgacaagcataattcatgaaggtctt 297  Q
    |||||||||||| |||| ||||||||||||||||| ||   ||           |||||||  |||| |  |||||||||| ||||||||||||||||||    
T  30714123 tgaggttgaagctcttcgagtacttgctcagcactaacaacaggggtctttggaattccttgtttgtctttccatgacaagtataattcatgaaggtctt 30714024  T
Q  298 ttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgttactc 365  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||    
T  30714023 ttttacccatcaaattagccgcttcagcttcaaataaactgccaacattgtttaatcctttgatactc 30713956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 10 - 365
Target Start/End: Original strand, 30435036 - 30435391
Alignment:
Q  10 catcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgca 109  Q
    ||||||||||||||||||||||||||| ||||  | ||| ||| ||       ||||||||||||||||||| | ||||||||||||||| ||| |||||    
T  30435036 catcatcatccaagtatttcagattattcataccatatactctaagtttttttagagatggtagtttaccaaataacggaagccgcacaattttgttgca 30435135  T
Q  110 aaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgag 209  Q
    |   | ||||| || | |||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||   |||| | ||||||||||||    
T  30435136 atccccaagtttaagagaaattaaattactaagaataattatccaacttggtaacgataatccgtcatagcaatttatatccaagcacttgagatttgag 30435235  T
Q  210 tgaggttgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatca 309  Q
    |||||||||||| |||| |||| ||||||||  || |   |||||||||  |   ||  ||| ||||||||||||||||||||||||||||||||| |||    
T  30435236 tgaggttgaagctcttcgagtaattgctcagatctaattatagattcctgttgcgatatccacgacaagcataattcatgaaggtcttttttacccttca 30435335  T
Q  310 aattagccgcttcagcttcagataaactaccaacattgtttaatcctttgttactc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30435336 aattagccgcttcagcttcagataaactaccaacattgtttaatcctttgatactc 30435391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 10 - 357
Target Start/End: Complemental strand, 30339414 - 30339067
Alignment:
Q  10 catcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgca 109  Q
    ||||||||||||||||||||||||||| ||||  | ||| ||| ||       ||||||||||||||||||||| || ||||| |||||| ||| |||||    
T  30339414 catcatcatccaagtatttcagattattcatacgatatactctaagattttttagagatggtagtttaccaagtaactgaagcagcacaattttgttgca 30339315  T
Q  110 aaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgag 209  Q
    |   | ||| | || | ||||||||||||||||||   ||||||||||||||||||||||||||||||||  ||||| ||||||| | ||||||||||||    
T  30339314 attccaaagattaagagaaattaaattactaagaaggcttatccaacttggtaacgataatccttcatagaaatttactgtcaaggaattgagatttgag 30339215  T
Q  210 tgaggttgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatca 309  Q
    |||||||||||| |||| || |||||||||||||| |   |||||||||  |   ||  ||| ||||||||||||| |||||||||||||||||||||||    
T  30339214 tgaggttgaagctcttcgagcacttgctcagcactaattatagattcctgttgcgatatccacgacaagcataattgatgaaggtcttttttacccatca 30339115  T
Q  310 aattagccgcttcagcttcagataaactaccaacattgtttaatcctt 357  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||    
T  30339114 aattagccgcttcagcttcagataacctgccaacattgtttaatcctt 30339067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 30059571 - 30059930
Alignment:
Q  10 catcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgca 109  Q
    ||||||||||||||||||||||||||| |||||||||||||  |||       | |||||||||| |||||||| || |||||||||||||||| || ||    
T  30059571 catcatcatccaagtatttcagattatccatataagataattccaggttttttaaagatggtagtataccaagtaactgaagccgcacaactttcttaca 30059670  T
Q  110 aaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgag 209  Q
    |    |||||| || | ||| |||||||||||||||||||||||||||||| || |||||||| ||||||  | ||||| ||||| | ||||||||||||    
T  30059671 acgcttaagtttaagagaaactaaattactaagaataattatccaacttggcaaggataatccctcatagaaacttattttcaagcagttgagatttgag 30059770  T
Q  210 tgaggttgaagcacttcaagtacttgctcagcactgaccgtag-----------attcctt-cttgtatccccatgacaagcataattcatgaaggtctt 297  Q
    ||||||||||| |||||||||||||||||| |||| ||   ||           |||||||  |||| |  |||||||||| ||||||||||||||||||    
T  30059771 tgaggttgaagaacttcaagtacttgctcaacactaacaacagggttctttggaattccttgtttgtctttccatgacaagtataattcatgaaggtctt 30059870  T
Q  298 ttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctt 357  Q
    |||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||    
T  30059871 ttttacccatcaaattagccgcttcagcttcaaataacctgccaacattgtttaatcctt 30059930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 30399279 - 30399623
Alignment:
Q  10 catcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgca 109  Q
    ||||||||||||||||||||||||||| ||||| |||||||  |||       ||||| ||||||||||||| | || |||| ||||||||||| |||||    
T  30399279 catcatcatccaagtatttcagattatccatatcagataattccagtttttttagagacggtagtttaccaattaactgaagtcgcacaactttcttgca 30399378  T
Q  110 aaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgag 209  Q
    |   | |||||||| | ||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| ||||| | ||||||||||||    
T  30399379 attcccaagttcaagagaaactaaattactaagaataattatccaacttggtaatgataatccgtcatagtaatttattttcaagcacttgagatttgag 30399478  T
Q  210 tgaggttgaagcacttcaagtacttgctcagcactga------------ccgtagattccttcttgtatccccatgacaagcataattcatgaaggtctt 297  Q
    ||||||||||||||||| |||||||||| |||||| |              ||| || | |  |||  | ||||||||||||||||||||||||||||||    
T  30399479 tgaggttgaagcacttcgagtacttgctgagcactaatagttgggggattggtaaatccatagttgctttcccatgacaagcataattcatgaaggtctt 30399578  T
Q  298 ttttacccatcaaattagccgcttcagcttcagataaactaccaa 342  Q
    ||||||||||||||| |||||||| ||||| ||||||||| ||||    
T  30399579 ttttacccatcaaatcagccgcttgagcttgagataaactgccaa 30399623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 17419058 - 17418824
Alignment:
Q  10 catcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgca 109  Q
    ||||||||||||||||||||||||| | ||| |||||||||  |||       |||||| |||||||||||| ||||| ||||||||||   || |  ||    
T  17419058 catcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatgacgaaagccgcacacagttctcaca 17418959  T
Q  110 aaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgag 209  Q
    |  ||||||| |||||  || |||||||||||||||| ||||||||||||||||| ||| ||| ||||||| | ||||| ||||| | ||||||||||||    
T  17418958 attactaagtgcaacattaactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgag 17418859  T
Q  210 tgaggttgaagcacttcaagtacttgctcagcact 244  Q
    |||||||||||||||||||||| ||||||||||||    
T  17418858 tgaggttgaagcacttcaagtagttgctcagcact 17418824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 67 - 239
Target Start/End: Original strand, 29852570 - 29852742
Alignment:
Q  67 atggtagtttaccaagtgacggaagccgcacaacttttttgcaaaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacga 166  Q
    |||||||||||| |||| ||||||||||||||| ||| ||||||   | |||||||| | |||||||| |||||||||   |||||||||||||||||||    
T  29852570 atggtagtttacaaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaactactaagaaggcttatccaacttggtaacga 29852669  T
Q  167 taatccttcatagttatttattgtcaagtatttgagatttgagtgaggttgaagcacttcaagtacttgctca 239  Q
    |||||||||||||| ||||||   |||| | |||||||||||||||||||||||| |||| ||||||||||||    
T  29852670 taatccttcatagtaatttatgtccaagcacttgagatttgagtgaggttgaagctcttcgagtacttgctca 29852742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 268 - 365
Target Start/End: Original strand, 29852783 - 29852880
Alignment:
Q  268 cccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgttactc 365  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| || ||||  ||||| |||||| |||||    
T  29852783 cccatgacaaacataattcatgaatgtctgttttacccatcaaattagccgcttcagcttcagataaactgcccacatcttttaagcctttgatactc 29852880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 141
Target Start/End: Original strand, 4380925 - 4381003
Alignment:
Q  63 agagatggtagtttaccaagtgacggaagccgcacaacttttttgcaaaaactaagttcaacaaaaattaaattactaa 141  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||| || ||||| || | |||||||||||||||    
T  4380925 agagatgttagtttaccaagtgacggaagccgcacaactttgttgcaaacacaaagtttaagagaaattaaattactaa 4381003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 279 - 364
Target Start/End: Original strand, 30206008 - 30206093
Alignment:
Q  279 cataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgttact 364  Q
    |||||||| || ||||||||||||||||||||||| || |||| ||||||||||||||||| |||||  ||||| |||||| ||||    
T  30206008 cataattcctggaggtcttttttacccatcaaattggctgcttgagcttcagataaactacaaacatcatttaaacctttgatact 30206093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 273 - 365
Target Start/End: Complemental strand, 17418783 - 17418691
Alignment:
Q  273 gacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgttactc 365  Q
    |||||||||||||| || |||||||||||||| ||||| |||||  ||| ||||||||||||| |||||||||  ||||| |||||| |||||    
T  17418783 gacaagcataattcttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattaccaacatcttttaagcctttgatactc 17418691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 30474774 - 30474818
Alignment:
Q  198 ttgagatttgagtgaggttgaagcacttcaagtacttgctcagca 242  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  30474774 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagca 30474818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 239
Target Start/End: Original strand, 30205782 - 30205956
Alignment:
Q  65 agatggtagtttaccaagtgacggaagccgcacaacttttttgcaaaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaac 164  Q
    |||| |||||||||||| ||||||||||||||||  ||| |  |||   | |||| ||| |  || ||||||||| |||||| ||||||||||||||||     
T  30205782 agattgtagtttaccaaatgacggaagccgcacacatttctcacaattccaaagtacaagagcaactaaattactgagaatacttatccaacttggtaag 30205881  T
Q  165 gataatccttcatagttatttattgtcaagtatttgagatttgagtgaggttgaagcacttcaagtacttgctca 239  Q
     ||||||  | ||||| |   ||| ||||    ||||||||||||||||||||||||||||||| || |||||||    
T  30205882 aataatctgttatagtgacaaattatcaacctcttgagatttgagtgaggttgaagcacttcaaatagttgctca 30205956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 339
Target Start/End: Original strand, 17982400 - 17982470
Alignment:
Q  269 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactac 339  Q
    |||||||| |||||||||||  |||||||||||||| || ||||| ||  ||||| |||||||||||||||    
T  17982400 ccatgacaggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaactac 17982470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 30522332 - 30522299
Alignment:
Q  198 ttgagatttgagtgaggttgaagcacttcaagta 231  Q
    ||||||||||||||||||||||||||||||||||    
T  30522332 ttgagatttgagtgaggttgaagcacttcaagta 30522299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 231
Target Start/End: Complemental strand, 30562672 - 30562639
Alignment:
Q  198 ttgagatttgagtgaggttgaagcacttcaagta 231  Q
    ||||||||||||||||||||||||||||||||||    
T  30562672 ttgagatttgagtgaggttgaagcacttcaagta 30562639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 30430351 - 30430384
Alignment:
Q  201 agatttgagtgaggttgaagcacttcaagtactt 234  Q
    ||||||||||||| ||||||||||||||||||||    
T  30430351 agatttgagtgagattgaagcacttcaagtactt 30430384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 30474854 - 30474931
Alignment:
Q  269 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacatt 346  Q
    |||||||||| ||||||| || ||||| ||||||||||||||||| ||   |  ||||||| |||| |||||||||||    
T  30474854 ccatgacaaggataattcttggaggtcctttttacccatcaaattggcatgtcgagcttcaaataagctaccaacatt 30474931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 10 - 365
Target Start/End: Complemental strand, 20297492 - 20297125
Alignment:
Q  10 catcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgca 109  Q
    ||||||||||||||||||||||||||||||||  ||||| | ||||       ||||||||||||||||||| | |||||||| |||||| ||  |||||    
T  20297492 catcatcatccaagtatttcagattatacataccagatattgtcagtttttttagagatggtagtttaccaattaacggaagctgcacaatttcgttgca 20297393  T
Q  110 aaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgag 209  Q
    |     |||||||| | ||| |||||||||||||||||||||||||||||||||| | ||||| ||||||  |||||||  |||| | |||||||||||     
T  20297392 attctcaagttcaaaagaaactaaattactaagaataattatccaacttggtaaccacaatccatcatagcaatttatttccaagcacttgagatttgac 20297293  T
Q  210 tgaggttgaagcacttcaagtacttgctcagcactgac------------cgtagattccttcttgtatccccatgacaagcataattcatgaaggtctt 297  Q
    ||||||||||||||||| ||||||| ||||||||| ||             ||| |||  |  |||  | |||| |||||||||||||||||||||||||    
T  20297292 tgaggttgaagcacttcgagtactttctcagcacttacagttggtggcttggtaaatttatcattgctttcccaagacaagcataattcatgaaggtctt 20297193  T
Q  298 ttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttgttactc 365  Q
    |||||||||||||||| ||  ||| ||||||||||| ||| |||||||  ||||| |||||| |||||    
T  20297192 ttttacccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcctttgatactc 20297125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 13616084 - 13616155
Alignment:
Q  269 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactacc 340  Q
    |||||||||| |||||||||  |||||||||||| |||| ||||| ||  ||| ||||||| ||||||||||    
T  13616084 ccatgacaagaataattcatcgaggtcttttttatccattaaattggcttcttgagcttcaaataaactacc 13616155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 52351439 - 52351483
Alignment:
Q  269 ccatgacaagcataattcatgaaggtcttttttacccatcaaatt 313  Q
    |||||||| |||||||||  | |||||||||||||||||||||||    
T  52351439 ccatgacaggcataattctcggaggtcttttttacccatcaaatt 52351483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 26706546 - 26706761
Alignment:
Q  10 catcatcatccaagtatttcagattatacatataagataatctcagnnnnnnnagagatggtagtttaccaagtgacggaagccgcacaacttttttgca 109  Q
    ||||||||||||||||||||||||||  |||| ||||||||  |||       ||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  26706546 catcatcatccaagtatttcagattaaccatagaagataattccagtttttctagagatggtagtttaccaagtaacggaagccgcacaaatttcttgca 26706645  T
Q  110 aaaactaagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgag 209  Q
    |   | |||||||| | ||| |||||||||||||||| ||| |||||||||||| |||||||| || ||||  ||||||  |||| | ||||||||||||    
T  26706646 atccccaagttcaagagaaactaaattactaagaatacttacccaacttggtaatgataatccgtcgtagtactttatttccaagcacttgagatttgag 26706745  T
Q  210 tgaggttgaagcactt 225  Q
    ||||||||||||||||    
T  26706746 tgaggttgaagcactt 26706761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 345
Target Start/End: Original strand, 26706816 - 26706893
Alignment:
Q  268 cccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacat 345  Q
    ||||||||||||||||||  |  |||| |||||| ||||||||||| ||  ||| ||||||||||||||| |||||||    
T  26706816 cccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacat 26706893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 269 - 359
Target Start/End: Original strand, 7098897 - 7098987
Alignment:
Q  269 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttg 359  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||| ||  ||| |||||||||||||||||||||||| | ||| ||||||    
T  7098897 ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttg 7098987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 269 - 346
Target Start/End: Complemental strand, 7582349 - 7582272
Alignment:
Q  269 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacatt 346  Q
    ||||||||||||||||||||  |||||||||||||||||||| || ||  ||| |||||||||||||||||| |||||    
T  7582349 ccatgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataaactaccgacatt 7582272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 7582432 - 7582395
Alignment:
Q  198 ttgagatttgagtgaggttgaagcacttcaagtacttg 235  Q
    |||||||||| |||||||||||||||||||||||||||    
T  7582432 ttgagatttgtgtgaggttgaagcacttcaagtacttg 7582395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 7098814 - 7098862
Alignment:
Q  198 ttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactga 246  Q
    ||||||||||  ||||||||||||||||||| |||||| ||| ||||||    
T  7098814 ttgagatttgtatgaggttgaagcacttcaattacttgatcatcactga 7098862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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