View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6587_low_5 (Length: 223)
Name: NF6587_low_5
Description: NF6587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6587_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 31730172 - 31730230
Alignment:
| Q |
18 |
aaagttatctcaattctcaggttttgaaatcacgtattgcatttgataattatcacttg |
76 |
Q |
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| T |
31730172 |
aaagttatctcaattatcaggttttgaaatcacgtattgcatttgataattatcacttg |
31730230 |
T |
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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 31730316 - 31730362
Alignment:
| Q |
161 |
gctatatcaaacgaattatagtctcgccagaatatcacgaagttcat |
207 |
Q |
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| T |
31730316 |
gctatatcaaacgaattatagtctcgccagaatatcatgaagttcat |
31730362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 22211498 - 22211457
Alignment:
| Q |
32 |
tctcaggttttgaaatcacgtattgcatttgataattatcac |
73 |
Q |
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| T |
22211498 |
tctcaggttctgaaattacgtattgcatttgataattatcac |
22211457 |
T |
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