View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6588_high_1 (Length: 448)
Name: NF6588_high_1
Description: NF6588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6588_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 432
Target Start/End: Complemental strand, 2941262 - 2940838
Alignment:
| Q |
11 |
aatgaaatcactacaaaagtttatttaaataaagagaacatcnnnnnnnnnnnnnnn---aaggaaaataaagagaacatctgaaagccctttaaaagaa |
107 |
Q |
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| T |
2941262 |
aatgaaatcactacaaaagtttatttaaataaagagaacatctttttttttttttttttgaaggaaaataaagagatcatctgaaagccctttaaaagaa |
2941163 |
T |
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| Q |
108 |
tttggtatttgaaaccaaattttagactcggtggtcgattatgcgtaggaaaggtattcaaaccctgtgaatccgttcaaaaatgattaccattaattaa |
207 |
Q |
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| T |
2941162 |
tttggtatttgaaaccaaattttaaactcggtggtcgattatgcgtaggaaaggtattcaaaccctgtgaatccgttcgaaaatgattaccattaattaa |
2941063 |
T |
|
| Q |
208 |
cttttccaagattttgttaactttgtctcacattttaaaattaatttattaatttcttaatttatatacacatatatttcactgttgtaaaaattatttt |
307 |
Q |
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| T |
2941062 |
cttttccaagattttgtnaactttgtctcacattttaaaattaatttattaatttcttaatttatatacacatatatttcactgttgtaaaaattatttt |
2940963 |
T |
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| Q |
308 |
cagaatatattacaaagatggatttctattctaaagaaaaaagattcctatgtttctcacaaagtaaggaaattaattcacatatataaagcattcaagg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2940962 |
cagaatatattacaaagatggatttctattctaaagaaaaaagattcctatgtttctcacaaagtaaggaaattaattcacatatataaagcattcaagg |
2940863 |
T |
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| Q |
408 |
aataaaataccttcctacttcattt |
432 |
Q |
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| T |
2940862 |
aataaaataccttcctacttcattt |
2940838 |
T |
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