View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6588_high_10 (Length: 240)
Name: NF6588_high_10
Description: NF6588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6588_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 50250009 - 50250224
Alignment:
| Q |
4 |
gttagctttattcattgaatagtatcaagacttccagttttgttaaattattccacagctcatgttacaaatgcagtcaaacacatattagcatacaaat |
103 |
Q |
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| T |
50250009 |
gttagctttattcattgaatagtatcaagacttccagttttgttaaattattccacagctcatgttacaaatgcagtcaaacacatattagcatacaaat |
50250108 |
T |
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| Q |
104 |
gctacccaagagttcataatatcaagaaaacggtgaaggataatatttcaaaatcaaaacctcattctttaagttcttaaacttgatcattgtcagggag |
203 |
Q |
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| T |
50250109 |
gctacccaagagttcataatatcaagaaaacggtgaaggataatatttcaaaatcaaaacctcattcttcaagttcttaaacttgatcattgtcagggag |
50250208 |
T |
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| Q |
204 |
tgaaagcaaagactct |
219 |
Q |
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| T |
50250209 |
tgaaagcaaagactct |
50250224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 50667081 - 50667041
Alignment:
| Q |
65 |
atgttacaaatgcagtcaaacacatattagcatacaaatgc |
105 |
Q |
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|||||| |||||||||||||||||||||| | ||||||||| |
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| T |
50667081 |
atgttataaatgcagtcaaacacatattatcctacaaatgc |
50667041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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