View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6588_high_5 (Length: 279)
Name: NF6588_high_5
Description: NF6588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6588_high_5 |
 | |
|
| [»] scaffold0059 (2 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0864 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0059 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 4 - 264
Target Start/End: Complemental strand, 3383 - 3123
Alignment:
| Q |
4 |
caatattcttactataaacgaattgactgagccagaacaagatcttagatatatctagacattcttatcaatggatggtaacattgagtcttcagaagat |
103 |
Q |
| |
|
|||||| |||||||| || | |||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3383 |
caatatgcttactatgaattatttgacttagccagaagaagatctgaaatatatctagacattcttatcaatggatggtaacattgagtcttcagaagat |
3284 |
T |
|
| Q |
104 |
gcctttgtatttgaaaattaccattattttcaattcccaaaaacaaaggtaatttctgaaaacccaagtgatcattcatcaataagacaaggccaccata |
203 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||| |||| ||| ||| |
|
|
| T |
3283 |
gcctttgtctttgaaaattaccattattttcaattcccaaaaacaaaggtaatttctgaaaactcaagtgaccatccatcgataagataaggtcactata |
3184 |
T |
|
| Q |
204 |
gatatctacgagctagttctatctaagtgaatttattattaggaagcatattgaccttggt |
264 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3183 |
tatatctatgagctagttctatctaagtgaatttattattaggaggcatattgaccttggt |
3123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 264
Target Start/End: Complemental strand, 9542 - 9282
Alignment:
| Q |
4 |
caatattcttactataaacgaattgactgagccagaacaagatcttagatatatctagacattcttatcaatggatggtaacattgagtcttcagaagat |
103 |
Q |
| |
|
|||||| ||||||||||| || |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
9542 |
caatatgcttactataaatgatttgacttagccagaagaagatcttaaatatatctagacattcttatcaatggatggtaaccttgagtcttcagaaggt |
9443 |
T |
|
| Q |
104 |
gcctttgtatttgaaaattaccattattttcaattcccaaaaacaaaggtaatttctgaaaacccaagtgatcattcatcaataagacaaggccaccata |
203 |
Q |
| |
|
| |||||| |||||||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||| | ||| |||| |||||| |||| ||| ||| |
|
|
| T |
9442 |
gactttgtctttgaaaattaccatttttttaaatacccaaaaacaaaggtaatttctgaaaactcaagtaaccatccatcgataagataaggtcactata |
9343 |
T |
|
| Q |
204 |
gatatctacgagctagttctatctaagtgaatttattattaggaagcatattgaccttggt |
264 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9342 |
tatatctatgagctagttctatctaagtgaatttattattaggaagcatattgaccttggt |
9282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 264
Target Start/End: Original strand, 235856 - 236116
Alignment:
| Q |
4 |
caatattcttactataaacgaattgactgagccagaacaagatcttagatatatctagacattcttatcaatggatggtaacattgagtcttcagaagat |
103 |
Q |
| |
|
|||||| ||||||||||| || |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
235856 |
caatatgcttactataaatgatttgacttagccagaagaagatcttaaatatatctagacattcttatcaatggatggtaaccttgagtcttcagaaggt |
235955 |
T |
|
| Q |
104 |
gcctttgtatttgaaaattaccattattttcaattcccaaaaacaaaggtaatttctgaaaacccaagtgatcattcatcaataagacaaggccaccata |
203 |
Q |
| |
|
| |||||| |||||||||||||||| |||| ||| |||||||||||||||||||||||||||| ||||| | ||| |||| |||||| |||| ||| ||| |
|
|
| T |
235956 |
gactttgtctttgaaaattaccatttttttaaatacccaaaaacaaaggtaatttctgaaaactcaagtaaccatccatcgataagataaggtcactata |
236055 |
T |
|
| Q |
204 |
gatatctacgagctagttctatctaagtgaatttattattaggaagcatattgaccttggt |
264 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
236056 |
tatatctatgagctagttctatctaagtgaatttattattaggaagcatattgaccttggt |
236116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 22601172 - 22601062
Alignment:
| Q |
1 |
tgccaatattcttactataaacgaattgactgagccagaacaagatcttagatatatctagacattcttatcaatggatggtaacattgagtcttcagaa |
100 |
Q |
| |
|
||||||||| ||| |||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||| ||| ||||| |
|
|
| T |
22601172 |
tgccaatatgcttcttataaatgaattgacttagccagaccaagatcttagatatatctagacattcttatcaatggacggtaactttgaatctacagaa |
22601073 |
T |
|
| Q |
101 |
gatgcctttgt |
111 |
Q |
| |
|
| ||||||||| |
|
|
| T |
22601072 |
ggtgcctttgt |
22601062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0864 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0864
Description:
Target: scaffold0864; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 924 - 744
Alignment:
| Q |
1 |
tgccaatattcttactataaacgaattgactgagccagaacaagatcttagatatatctagacattcttatcaatggatggtaacattgagtcttcagaa |
100 |
Q |
| |
|
|||||| || ||| ||||||| ||||| ||| || || |||| |||||| |||||||||||||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
924 |
tgccaaaatgcttcctataaatgaattaacttagacatgacaaaatcttaaatatatctagacattcttatcaatggatggtaacctagagtctttagaa |
825 |
T |
|
| Q |
101 |
gatgcctttgtatttgaaaattaccattattttcaattcccaaaaacaaaggtaatttctgaaaacccaagtgatcattcat |
182 |
Q |
| |
|
| | ||| ||| ||||||||||||| || |||||||| ||||||||||||| | ||||| || || ||||||| ||||||| |
|
|
| T |
824 |
ggtacctctgtctttgaaaattacc-tttgtttcaatttccaaaaacaaaggaactttctcaagactcaagtgaccattcat |
744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University