View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6588_high_6 (Length: 263)
Name: NF6588_high_6
Description: NF6588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6588_high_6 |
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| [»] scaffold0059 (2 HSPs) |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: scaffold0059 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 42 - 263
Target Start/End: Complemental strand, 3687 - 3466
Alignment:
| Q |
42 |
atcaaccattacaatggaagcccaagttaagctatcaggttcggtataaagttattttattcaagggcatataaaagttatgaaagaggaaccccatgtt |
141 |
Q |
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|||||| ||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
3687 |
atcaacaattacgatggaagcccaagttaacctatcaggttccgtataaagttgttttattcaagtgcatatataagttatgaaagaggaaccccatgtt |
3588 |
T |
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| Q |
142 |
aagcttatatcttccacctatgtcagatgctttggtgtggctttgaccaagggtcgtaatttattaccaagagtgctaattggtgaactaaatatcaaag |
241 |
Q |
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| T |
3587 |
atgcttatatctttcacctatgtcagatgctttggtgtggctttgaccaagggtcgtaatttattaccaagagtgctaataggtgaactaaatatcaaag |
3488 |
T |
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| Q |
242 |
gtgtcttctcatgtggatccaa |
263 |
Q |
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||||||||||| |||||||||| |
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| T |
3487 |
gtgtcttctcaggtggatccaa |
3466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 42 - 263
Target Start/End: Complemental strand, 9847 - 9625
Alignment:
| Q |
42 |
atcaaccattacaatggaagcccaagttaagctatcaggttcggtataaa-gttattttattcaagggcatataaaagttatgaaagaggaaccccatgt |
140 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
9847 |
atcaacaattacaatggaagcccaagttaagctatcagattccgtataaaagttattttattcaagtgcatatataagttatgaaagaggaaccccatgt |
9748 |
T |
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| Q |
141 |
taagcttatatcttccacctatgtcagatgctttggtgtggctttgaccaagggtcgtaatttattaccaagagtgctaattggtgaactaaatatcaaa |
240 |
Q |
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| T |
9747 |
taagcttatatctttcatctatgtcagaagctttggtgtggctttgaccaagggtcgtaatttattaataagagtgctaataggtgaactaaaaatctaa |
9648 |
T |
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| Q |
241 |
ggtgtcttctcatgtggatccaa |
263 |
Q |
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| T |
9647 |
ggtgtattctcaggtggatccaa |
9625 |
T |
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Back To:
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Target: scaffold0013 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 42 - 263
Target Start/End: Original strand, 235551 - 235773
Alignment:
| Q |
42 |
atcaaccattacaatggaagcccaagttaagctatcaggttcggtataaa-gttattttattcaagggcatataaaagttatgaaagaggaaccccatgt |
140 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
235551 |
atcaacaattacaatggaagcccaagttaagctatcagattccgtataaaagttattttattcaagtgcatatataagttatgaaagaggaaccccatgt |
235650 |
T |
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| Q |
141 |
taagcttatatcttccacctatgtcagatgctttggtgtggctttgaccaagggtcgtaatttattaccaagagtgctaattggtgaactaaatatcaaa |
240 |
Q |
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|||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| || |
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| T |
235651 |
taagcttatatctttcatctatgtcagaagctttggtgtggctttgaccaagggtcgtaatttattaataagagtgctaataggtgaactaaaaatctaa |
235750 |
T |
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| Q |
241 |
ggtgtcttctcatgtggatccaa |
263 |
Q |
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||||| |||||| |||||||||| |
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| T |
235751 |
ggtgtattctcaggtggatccaa |
235773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 259
Target Start/End: Original strand, 244384 - 244519
Alignment:
| Q |
124 |
aaagaggaaccccatgttaagcttatatcttccacctatgtcagatgctttgg-tgtggctttgaccaagggtcgtaatttattaccaagagtgctaatt |
222 |
Q |
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||||||||| |||||||||| ||| | ||| | |||||||||||||||||| |||||||||||||||| | | ||||||||||| |||||||||||| |
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| T |
244384 |
aaagaggaagcccatgttaaacttgcaccttttatctatgtcagatgctttgggtgtggctttgaccaagtgccataatttattactaagagtgctaata |
244483 |
T |
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| Q |
223 |
ggtgaactaaatatcaaaggtgtcttctcatgtggat |
259 |
Q |
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| T |
244484 |
gatgaactgca-atcaaaggtgttttctcttgtggat |
244519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 120 - 261
Target Start/End: Complemental strand, 22601395 - 22601254
Alignment:
| Q |
120 |
tatgaaagaggaaccccatgttaagcttatatcttccacctatgtcagatgctttggtgtggctttgaccaagggtcgtaatttattaccaagagtgcta |
219 |
Q |
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|||||| |||||| |||| ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | |||| ||| |
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| T |
22601395 |
tatgaatgaggaagcccaagttaagcttgcatctttcacctatgtcagatgctttcgtgtggctttgaccaagcgtcgtaatttattactatgagtacta |
22601296 |
T |
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| Q |
220 |
attggtgaactaaatatcaaaggtgtcttctcatgtggatcc |
261 |
Q |
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| T |
22601295 |
ataggtgaactaaaaatcaaaggtgacttttctggtggatcc |
22601254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 22604769 - 22604669
Alignment:
| Q |
13 |
aatatttccccacaatatggnnnnnnnttatcaaccattacaatggaagcccaagttaagctatcaggttcggtataaagttattttattcaagggcata |
112 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
22604769 |
aatatttccccacaatatggaaaaaaattatcaaccattacaatggaagcccaagttaagctatcaggttccatataaagttattttattcaagtgcata |
22604670 |
T |
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| Q |
113 |
t |
113 |
Q |
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| T |
22604669 |
t |
22604669 |
T |
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