View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6588_low_13 (Length: 239)
Name: NF6588_low_13
Description: NF6588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6588_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 43566146 - 43565934
Alignment:
| Q |
15 |
aatatgtatactttttcaaaaagccaagcaatttgtnnnnnnnnnn-tgtattctaaactttgattatgcatgtcaaattgatacattggtcaacaaaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43566146 |
aatatgtatactttttcaaaaagccaagcaatttgtaaaaaaaaaaatgtattctaaactttgattatgcatgtcaaattgatacattggtcaacaaaat |
43566047 |
T |
|
| Q |
114 |
actt-gagcaaaataaatacataaacacaccaaacacttattactaattaacattgcaaagaagattaaataaacaatttaagattcatctnnnnnnnca |
212 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43566046 |
actttgagcaaaataaatacataaacacaccaaacacttattactaattaacattgcaaagaagattaaataaacaatttaagattcatctaaaaaaaca |
43565947 |
T |
|
| Q |
213 |
ttagatgatattg |
225 |
Q |
| |
|
||||||||||||| |
|
|
| T |
43565946 |
ttagatgatattg |
43565934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University