View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6588_low_14 (Length: 236)
Name: NF6588_low_14
Description: NF6588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6588_low_14 |
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| [»] scaffold0489 (1 HSPs) |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2461794 - 2461574
Alignment:
| Q |
1 |
ctatttgtagggtttgaagtagaaaagttaggagataatttttgtggtgaaagtgcttcattaagtgcttttttggccatttgaatatctgtttgaagtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2461794 |
ctatttgtagggtttgaagtagaaaagttaggagataatttttgtggtgaaagtgcttcattaagtgcttttttggccatttgaatatctgtttgaagtc |
2461695 |
T |
|
| Q |
101 |
ttctttcccattgacctcttggaatcctttgagttgctgaaaatttttcttcttcaaaattaatgcattcagcattattacctgtttgtgattttcttag |
200 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2461694 |
ttctttcccattgacctcttggaattctttgagatgctgaaaatttttcttcttcaaaattaatgcattcagcattattacctgtttgtgatttctttag |
2461595 |
T |
|
| Q |
201 |
cttctttttcaaatgagtatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
2461594 |
cttctttttcaaatgagtatt |
2461574 |
T |
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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 3617182 - 3617118
Alignment:
| Q |
55 |
gcttcattaagtgcttttttggccatttgaatatctgtttgaagtcttctttcccattgacctct |
119 |
Q |
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|||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |
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| T |
3617182 |
gcttcactaagtgcttttttggccatgtgaatatcagtttgaagtcttctttcccattgtcctct |
3617118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0489 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 10132 - 10182
Alignment:
| Q |
67 |
gcttttttggccatttgaatatctgtttgaagtcttctttcccattgacct |
117 |
Q |
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|||| ||||||||| |||||||||||||| || |||||||||||||||||| |
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| T |
10132 |
gcttgtttggccatatgaatatctgtttgtagccttctttcccattgacct |
10182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 10896 - 10846
Alignment:
| Q |
67 |
gcttttttggccatttgaatatctgtttgaagtcttctttcccattgacct |
117 |
Q |
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|||| ||||||||| |||||||||||||| || |||||||||||||||||| |
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| T |
10896 |
gcttgtttggccatatgaatatctgtttgtagccttctttcccattgacct |
10846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 13993252 - 13993302
Alignment:
| Q |
67 |
gcttttttggccatttgaatatctgtttgaagtcttctttcccattgacct |
117 |
Q |
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|||| ||| ||||| || |||||||||||||||||||| |||||||||||| |
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| T |
13993252 |
gcttgttttgccatatggatatctgtttgaagtcttctctcccattgacct |
13993302 |
T |
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