View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6588_low_2 (Length: 427)
Name: NF6588_low_2
Description: NF6588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6588_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 50228843 - 50228427
Alignment:
| Q |
1 |
ttggatcgtatcaaactccaatcatggtagtgtttgaacaatcatagattgatttttgttgtagattttcattcttggtggattgaagggatgattgtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50228843 |
ttggatcgtatcaaactccaatcatggtagtgtttgaacaatcatagattgatttttgttgtagattttcattcttggtggattgaagggatgattgtta |
50228744 |
T |
|
| Q |
101 |
atacttaatatagttttttagcagcgagaggtatattatagtaacagtatcgttcaaaattcaaaaatgtcgatgaggtagatgagatgacaaacatatg |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50228743 |
atacttaatatagttttttagcagcgggaggtatattatagtaacagtatcgttcaaaattcaaaaatgtcgatgaggtagatgagatgacaaacatatg |
50228644 |
T |
|
| Q |
201 |
ctctcattcgcaactgcaacaacgtctctccaattcaggttgttcttctctcacaatcaacaactactacttattcttccccctctaagattctttcctt |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
50228643 |
ctctcatttgcaactgcaacaacgtctctccaattcaggttgttcttctctcacaatcaacaactactacttattcttccccctctaagattctttccct |
50228544 |
T |
|
| Q |
301 |
gagtttccaatatcattaacaaccctagattcttctctcatcatcaaaccgccacgctccccatcaatgacgaaaaattggagaagttgttgtctcttat |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50228543 |
gagtttccaatatcattaacaaccctagattcttctctcatcatcaaaccgccacgctccccatcaatgacgaaaaattggagaagttgttgtctcttat |
50228444 |
T |
|
| Q |
401 |
gcagagtaatgatgatg |
417 |
Q |
| |
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|||||||||||| |||| |
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| T |
50228443 |
gcagagtaatgacgatg |
50228427 |
T |
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