View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6588_low_3 (Length: 420)
Name: NF6588_low_3
Description: NF6588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6588_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 42683787 - 42683383
Alignment:
| Q |
1 |
acaaaccttaagcttatccctttgatttgaagtattacatacagtgaaaataaataatacctgtgaattgcaaacaaatttctaaattcaattaattgct |
100 |
Q |
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| T |
42683787 |
acaaaccttaagcttatccctttgatttgaagtattacatacagtgaaaataaataatacctgtgaattgcaaataaatttctaaattcaattaattgct |
42683688 |
T |
|
| Q |
101 |
caaagaaacaaacgccattgaaaattaatgtaatcagaatatcaacatcctaagtttcttacttttttgttaatactctcccttccattgtcagtaacac |
200 |
Q |
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| T |
42683687 |
caaagaaacaaacgccattgaaaattaatgtaatcagaatatcaacatcctaagtttcttacttttttgttaatactctcccttccattgtcagtaacac |
42683588 |
T |
|
| Q |
201 |
gaatagtcgagtctatcattgcacttctcattggctcctgaaaattacaatcctttcattcatttatcacaatcaacaacatgatcatttgcaataatga |
300 |
Q |
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| T |
42683587 |
gaatagtcgagtctatcattgcacttctcattggctcctgaaaattacaatcctttcattcatttatcacaatcaacaacatgatcatttgcaataatga |
42683488 |
T |
|
| Q |
301 |
gaattatgtttaaattttgctcttattgatacattacaacatttaatatatgaaaccaatgcatgttgcttgcctagtaaaagttgttaaattaaggaac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42683487 |
gaattatgtttaaattttgctcttattgatacattacaacatttaatatatgaaaccaatgcatgttgcttgcatagtaaaagttgttaaattaaggaac |
42683388 |
T |
|
| Q |
401 |
aagat |
405 |
Q |
| |
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||||| |
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| T |
42683387 |
aagat |
42683383 |
T |
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