View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6588_low_5 (Length: 337)
Name: NF6588_low_5
Description: NF6588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6588_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 4218108 - 4217810
Alignment:
| Q |
27 |
actcaatagtactccaatttatagaattgttgatttctctaaatgataagtgaatgaattaattgtggttttgcgtgatagaaaacaatttcacaaaatt |
126 |
Q |
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| T |
4218108 |
actcaatagtactccaatttatagaattgttgatttctctaaatgataagtgaatgaattaattgtggttttgcgtgatagaaaacaatttcacaaaatt |
4218009 |
T |
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| Q |
127 |
agggtaaagctgaaaactgtgtgggagccaggtttaaatattaaggttgaccggaatattgttatagaaggaatgaataaaaattaattaagtcaaatga |
226 |
Q |
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| T |
4218008 |
agggtaaagctgaaaactgtgtgggagccaggtttaaatattaaggttgaccggaatattgttatagaaggaatgaataaaaattaattaagtcaaatga |
4217909 |
T |
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| Q |
227 |
tgtagttaatctggttaacaaatggaaatttgagg---tgacctttggaccattcattaattaatggattaagcatttatcatatatgacaaaggtctt |
322 |
Q |
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| T |
4217908 |
tgtagttaatctggttagcaaatggaaatttgaggtgatgacctttggaccattcattaattaatggattaagcatttattatatatgacaaaggtctt |
4217810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 39 - 257
Target Start/End: Complemental strand, 4215525 - 4215305
Alignment:
| Q |
39 |
tccaatttatagaattgttgatttctctaaatgataagtgaatgaattaattgtggttttgcgtgat-agaaaacaatttcacaaaattagggtaaagct |
137 |
Q |
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| T |
4215525 |
tccaatttatagatctattgatttccttaaatgagaagtgaatgaattaattgtgcctacgcaagttcaaaaaataatttcacaaaattaaggtaaagat |
4215426 |
T |
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| Q |
138 |
gaaaactgtgtgggagccaggt-ttaaatattaaggttgaccggaatattgttatagaaggaatgaataaaaattaattaagtcaaatgatgtagttaat |
236 |
Q |
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| T |
4215425 |
gaaaattgtgtgggagccatgtcttaaatattatggttgtctagaatatagttatagaaggaacaaataaaaattaattaggtcaaaagatatagataaa |
4215326 |
T |
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| Q |
237 |
ctggttaacaaatggaaattt |
257 |
Q |
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| T |
4215325 |
ctggttaacaaatggaaattt |
4215305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 264
Target Start/End: Complemental strand, 4384446 - 4384348
Alignment:
| Q |
166 |
attaaggttgaccggaatattgttatagaaggaatgaataaaaattaattaagtcaaatgatgtagttaatctggttaacaaatggaaatttgaggtga |
264 |
Q |
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| T |
4384446 |
attaaagttgaccacaatattgttatggaatcaataaataaaaattaattaagtcaaatgatataggtaaactggttaacaaatggaaaattgaggtga |
4384348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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