View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6588_low_8 (Length: 262)
Name: NF6588_low_8
Description: NF6588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6588_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 26 - 262
Target Start/End: Complemental strand, 50229073 - 50228838
Alignment:
| Q |
26 |
aggttgtgaagtttttagtaatgtttggaatggcgtttgtcggtggttgggtattgttttgtgaacccagttgacattggagagcatgctttacaatttt |
125 |
Q |
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| T |
50229073 |
aggttgtgaagtttttagtaatgtttggaatggcgtttgtcggtggttgggtattgttttgtgaacccagttgacattggagagcatgcttta-aatttt |
50228975 |
T |
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| Q |
126 |
gtggtgcttacttgtttagaaaggaattttgtatgtgttttcaggcaatttggatgacatgtatttgaattatttggaaagaacataattcaagaatttt |
225 |
Q |
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| T |
50228974 |
gtggtgcttacttgtttagaaaggaattttgtatgtgttttcaggcaatttggatgacatgtatttgaattatttggaaagaacataattcaagaatttt |
50228875 |
T |
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| Q |
226 |
ttgtaggaaataagaatctttcaagcagctattggat |
262 |
Q |
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| T |
50228874 |
ttgtaggaaataagaatctttcaagcagctattggat |
50228838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 39380798 - 39380661
Alignment:
| Q |
30 |
tgtgaagtttttagtaatgtttggaatggcgtttgtcggtggttgggta-ttgttttgtgaacccagttgacattggagagcatgctttacaa-ttttgt |
127 |
Q |
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| T |
39380798 |
tgtgatgtttttagtaatgtttggaatggtgtttttcgatggttgggtatttgttttgagaatccaattgacaatggagagcttgctctacaatttttgt |
39380699 |
T |
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| Q |
128 |
ggtgcttacttgtttagaaaggaattttgtatgtgttt |
165 |
Q |
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| T |
39380698 |
ggtgcttatatgttcagaaagggaatttgtatgtgttt |
39380661 |
T |
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