View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6588_low_9 (Length: 251)

Name: NF6588_low_9
Description: NF6588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6588_low_9
NF6588_low_9
[»] chr7 (1 HSPs)
chr7 (13-251)||(37066379-37066619)
[»] chr3 (2 HSPs)
chr3 (13-248)||(1915686-1915923)
chr3 (81-113)||(12912722-12912754)
[»] chr1 (1 HSPs)
chr1 (13-251)||(50443292-50443535)
[»] chr8 (3 HSPs)
chr8 (18-123)||(15657631-15657738)
chr8 (164-251)||(15657538-15657626)
chr8 (65-114)||(37003059-37003108)
[»] chr5 (2 HSPs)
chr5 (18-123)||(28827792-28827899)
chr5 (160-251)||(28827694-28827786)
[»] chr6 (2 HSPs)
chr6 (18-123)||(22274700-22274807)
chr6 (160-251)||(22274602-22274694)
[»] chr2 (2 HSPs)
chr2 (166-251)||(39574403-39574489)
chr2 (71-123)||(39574339-39574391)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 37066379 - 37066619
Alignment:
Q  13 aaaatgaaaacagagtattaggtgacgatagagagaga--acgacggaaaacacgtttacgtgagggtagagagagaacgacggcgagaaattcgccgga 110  Q
    ||||||||||||||||||||||||| | ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37066379 aaaatgaaaacagagtattaggtgatggtagagagagataacgacggaaaacacgtttaggtgagggtagagagagaacgacggcgagaaattcgccgga 37066478  T
Q  111 aaagagaagtggctgccgttttgtgctagctgttggtgaggaatagccgttcgcatttagggtttgggtgaggaagaaacagaaaaatgaaattttatgg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||| |||    
T  37066479 aaagagaagtggctgccgttttgtgctagctgttggtgaggaacagccgttcgtgtttagggtttgggtgaggaagaaacagaaaaatgaaattttctgg 37066578  T
Q  211 gttttatcttttatacaaaaccgggttatcttttgacccga 251  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37066579 gttttatcttttatacaaaaccgggttatcttttgacccga 37066619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 1915923 - 1915686
Alignment:
Q  13 aaaatgaaaacagagtattaggtgacgatagagagaga--acgacggaaaacacgtttacgtgagggtagagagagaacgacggcgagaaattcgccgga 110  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1915923 aaaatgaaaacagagtattaggtgacggtagagagagagaacgacggaaaacacgtttaggtgagggtagagagagaacgacggcgagaaattcgccgga 1915824  T
Q  111 aaagagaagtggctgccgttttgtgctagctgttggtgaggaatagccgttcgcatttagggtttgggtgaggaagaaacagaaaaatgaaattttatgg 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  1915823 aaagagaagtggccgccgttttgtgctagctgttggtgaggaacagccgttcgcgtttagggtttgggtgaggaagaaacagaaaaatgaaattttctgg 1915724  T
Q  211 gttttatcttttatacaaaaccgggttatcttttgacc 248  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  1915723 gttttatcttttatataaaaccgggttatcttttgacc 1915686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 12912754 - 12912722
Alignment:
Q  81 agagagaacgacggcgagaaattcgccggaaaa 113  Q
    ||||||||||||||||||||||||||| |||||    
T  12912754 agagagaacgacggcgagaaattcgccagaaaa 12912722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 50443535 - 50443292
Alignment:
Q  13 aaaatgaaaaca--gagtattaggtgacgatagagaga--gaacgacggaaaacacgtttacgtgagggtagagagagaacgacggcgagaaattcgccg 108  Q
    ||||||||||||  ||||||||||||||| ||||||||  ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||    
T  50443535 aaaatgaaaacaaagagtattaggtgacggtagagagatagaacgacggaaaacatgtttaggtgagggtagagagagaacaacggcgagaaattcgccg 50443436  T
Q  109 gaaaagagaagtggctgccgttttgtgctagctgttggtgaggaatagccgttcgcatttagggtttgggtgaggaagaaacagaaaaatgaaa-tttta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||| ||||     
T  50443435 gaaaagagaagtggctgccgttttgtgctagctgttggtgaggaacaaccgttcgcatttagggtttgggtgaagaagaaacagaaaaatgaaatttttt 50443336  T
Q  208 tgggttttatcttttatacaaaaccgggttatcttttgacccga 251  Q
    |||||||||||||||||| ||||||| |||||||||| ||||||    
T  50443335 tgggttttatcttttatataaaaccgagttatctttttacccga 50443292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 15657738 - 15657631
Alignment:
Q  18 gaaaacagagtattaggtgacgatagagagaga--acgacggaaaacacgtttacgtgagggtagagagagaacgacggcgagaaattcgccggaaaaga 115  Q
    |||||||||||||||||||| | ||||||||||  |||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  15657738 gaaaacagagtattaggtgagggtagagagagagaacgacgaaaaacacgtttaggtgagggtagagagagaacgacggcgagaaattcaccggaaaaga 15657639  T
Q  116 gaagtggc 123  Q
    ||||||||    
T  15657638 gaagtggc 15657631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 15657626 - 15657538
Alignment:
Q  164 catttagggtttgggtgaggaagaaacagaaaaatgaaat-tttatgggttttatcttttatacaaaaccgggttatcttttgacccga 251  Q
    |||||||||||| |||||||||||||||||| |||||||  ||| |||||||||||||||||| |||||| |||||| |||||||||||    
T  15657626 catttagggtttaggtgaggaagaaacagaataatgaaaaatttctgggttttatcttttatataaaaccaggttatattttgacccga 15657538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 37003059 - 37003108
Alignment:
Q  65 gtttacgtgagggtagagagagaacgacggcgagaaattcgccggaaaag 114  Q
    ||||| ||||||| |||||| ||||||||||||||| || ||||||||||    
T  37003059 gtttaggtgagggaagagagtgaacgacggcgagaactttgccggaaaag 37003108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 28827899 - 28827792
Alignment:
Q  18 gaaaacagagtattaggtgacgatagagagaga--acgacggaaaacacgtttacgtgagggtagagagagaacgacggcgagaaattcgccggaaaaga 115  Q
    |||||||||||| ||||||| | ||||||||||  | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28827899 gaaaacagagtaataggtgagggtagagagagagaatgacggaaaacacgtttaggtgagggtagagagagaacgacggcgagaaattcgccggaaaaga 28827800  T
Q  116 gaagtggc 123  Q
    ||||||||    
T  28827799 gaagtggc 28827792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 28827786 - 28827694
Alignment:
Q  160 ttcgcatttagggtttgggtgaggaagaaacagaaaaatgaaa-ttttatgggttttatcttttatacaaaaccgggttatcttttgacccga 251  Q
    ||||| |||||||||||| |||||||||||||||| ||||||| |||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  28827786 ttcgcgtttagggtttggctgaggaagaaacagaagaatgaaaattttctgggttttatcttttatataaaaccgggttatattttgacccga 28827694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 22274807 - 22274700
Alignment:
Q  18 gaaaacagagtattaggtgacgatagagagaga--acgacggaaaacacgtttacgtgagggtagagagagaacgacggcgagaaattcgccggaaaaga 115  Q
    ||||||| |||||||||||| | ||||||||||  ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22274807 gaaaacaaagtattaggtgagggtagagagagagaacgacagaaaacacgtttaggtgagggtagagagagaacgacggcgagaaattcgccggaaaaga 22274708  T
Q  116 gaagtggc 123  Q
    | ||||||    
T  22274707 ggagtggc 22274700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 22274694 - 22274602
Alignment:
Q  160 ttcgcatttagggtttgggtgaggaagaaacagaaaaatg-aaattttatgggttttatcttttatacaaaaccgggttatcttttgacccga 251  Q
    ||||| |||||||||||||||| |||||||||||| |||| ||||||| | |||||||| ||||||| |||| |||||||| |||||||||||    
T  22274694 ttcgcgtttagggtttgggtgaagaagaaacagaagaatgaaaattttctaggttttatattttatataaaatcgggttatattttgacccga 22274602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 39574403 - 39574489
Alignment:
Q  166 tttagggtttgggtgaggaagaaacagaaaaatgaaa-ttttatgggttttatcttttatacaaaaccgggttatcttttgacccga 251  Q
    |||||||||||| |||||||||||||||| ||||||| |||| |||||||||||||||||| ||||||||||||| |||||||||||    
T  39574403 tttagggtttggctgaggaagaaacagaagaatgaaaattttctgggttttatcttttatataaaaccgggttatattttgacccga 39574489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 39574339 - 39574391
Alignment:
Q  71 gtgagggtagagagagaacgacggcgagaaattcgccggaaaagagaagtggc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39574339 gtgagggtagagagagaacgacggcgagaaattcgccggaaaagagaagtggc 39574391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University