View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6590_high_5 (Length: 255)
Name: NF6590_high_5
Description: NF6590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6590_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 28 - 239
Target Start/End: Original strand, 50070732 - 50070943
Alignment:
| Q |
28 |
aattccacaaagtgaattgattcgggctaagaccaatatttgctaagtcatcaacacattagttaccctctctatagatgtgagagnnnnnnnttcatag |
127 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
50070732 |
aattccacaaagtgaattgattcggggtaagaccaatatttactaagccatcaacacattagttatcctctctatagatgtgagagaaaaaaattcatag |
50070831 |
T |
|
| Q |
128 |
aatctatccattgacaacaattgaaccatttgttccttaacctccaaagaattagagtgttggatttcaaggcatggactaccataacagaatctaactc |
227 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50070832 |
aacctatccattgacaacaattgaaccatttgttccttaacctccaaagaattagagtgttggatttcaaggcatggactaccataacagaatctaactc |
50070931 |
T |
|
| Q |
228 |
aagccaaaggtg |
239 |
Q |
| |
|
|||||||||||| |
|
|
| T |
50070932 |
aagccaaaggtg |
50070943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University