View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6590_high_7 (Length: 238)
Name: NF6590_high_7
Description: NF6590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6590_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 92 - 222
Target Start/End: Original strand, 23703386 - 23703516
Alignment:
| Q |
92 |
caaattaatttgagcaattataacaaataacaaactatttaaataatccgtaaacaaacaatatttaaatcctttnnnnnnngaaactatttaaataaca |
191 |
Q |
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| T |
23703386 |
caaattaatttgagcaattataacaaataacaaactatttaaataatccgtaaacaaacaatatttaaatcctttaaaaaaagaaactatttaaataaca |
23703485 |
T |
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| Q |
192 |
atgtatcgcacggggtacatgtacaagttat |
222 |
Q |
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| T |
23703486 |
atgtatcgcacggggtacatgtacaagttat |
23703516 |
T |
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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23703224 - 23703283
Alignment:
| Q |
1 |
tacatcacagattcacgatgcttactgacttgagcattgaattgactttgtaggtaccac |
60 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23703224 |
tacatcacaggtttacgatgcttactgacttgagcattgaattgactttgtaggtaccac |
23703283 |
T |
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