View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6590_low_10 (Length: 237)
Name: NF6590_low_10
Description: NF6590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6590_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 6094201 - 6094420
Alignment:
| Q |
3 |
gaattgaagagttgcgattaaatgttagtgtaaaataacttttgatagacaatgcatatcccttaatctcgaatcttaagcctaccaacatgaacaatat |
102 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094201 |
gaattgaagagttgcgattgaatgttagtgtaaaataacttttgatagacaatgcatatcccttaatctcgaatcttaagcctaccaacatgaacaatat |
6094300 |
T |
|
| Q |
103 |
gcatgtatagagttgtattcttataaaaatgatgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgtttagacttgatttttaaatt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094301 |
gcatgtatagagttgtattcttataaaaatgatgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgtttagacttgatttttaaatt |
6094400 |
T |
|
| Q |
203 |
aagttatctaatatgaattt |
222 |
Q |
| |
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|||||||||||||||||||| |
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| T |
6094401 |
aagttatctaatatgaattt |
6094420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 44188037 - 44188259
Alignment:
| Q |
1 |
gcgaattgaagagttgcgattaaatgttagtgtaaaataacttttgatagacaatgcatatcccttaatctcgaatcttaagcctaccaacatgaacaat |
100 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44188037 |
gcgaattgaagagttgcaattgaatgttagtgtaaaataacttttgagtgacaatgcatatcccttaatctcgaatcttaaacctaccaacatgaacaat |
44188136 |
T |
|
| Q |
101 |
atgcatgtatagagttgtattcttataaaaatga-tgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgtttagacttgatttttaa |
199 |
Q |
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||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44188137 |
atggatgtatagagtagtattcttataaaaatgactgtgtggccttcactctatgtgtcacattcgaaattcaatgcttttgtttagacttgatttttaa |
44188236 |
T |
|
| Q |
200 |
attaagttatctaatatgaattt |
222 |
Q |
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||||||||||||||| ||||||| |
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| T |
44188237 |
attaagttatctaatttgaattt |
44188259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 32727167 - 32727386
Alignment:
| Q |
4 |
aattgaagagttgcgattaaatgttagtgtaaaataacttttgatagacaatgcatatcccttaatctcgaatcttaagcctaccaacatgaacaatatg |
103 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32727167 |
aattgaagagttgcaattgaatgttagtgtaaaataacttttgagtgacaatgcatatcccttaatctcgaatcttaaacctaccaacatgaacaatatg |
32727266 |
T |
|
| Q |
104 |
catgtatagagttgtattcttataaaaatga-tgtgtggccttcactctatgtgtcacattccaaattcaatgcttttgtttagacttgatttttaaatt |
202 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32727267 |
catgtatagagtagtattcttataaaaatgactgtgtggccttcactctatgtgtcacattcgaaattcaatgcttttgtttagacttgatttttaaatt |
32727366 |
T |
|
| Q |
203 |
aagttatctaatatgaattt |
222 |
Q |
| |
|
|||||||||||| ||||||| |
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|
| T |
32727367 |
aagttatctaatttgaattt |
32727386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 43095765 - 43095731
Alignment:
| Q |
4 |
aattgaagagttgcgattaaatgttagtgtaaaat |
38 |
Q |
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||||||||||||| ||||||||||||||||||||| |
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|
| T |
43095765 |
aattgaagagttgtgattaaatgttagtgtaaaat |
43095731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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