View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6590_low_11 (Length: 235)
Name: NF6590_low_11
Description: NF6590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6590_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 23703037 - 23702917
Alignment:
| Q |
103 |
tattaaatttttaattcgtgatcaatcaaaatcatttttacataatcagttgataagatgagagtcgtcctttaaaaattcatttcatatttcatcttta |
202 |
Q |
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| T |
23703037 |
tattagatttttaattcgtgatcaatcaaaatcatttttacataatcagttgataagatgagagtcgtcctttaaaaattcatttcatatttcatcttta |
23702938 |
T |
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| Q |
203 |
taaatgtaagatttagatttt |
223 |
Q |
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| T |
23702937 |
taaatgtaagatttagatttt |
23702917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 23703164 - 23703069
Alignment:
| Q |
1 |
ggtttagggctttggtcattgaacctctacctagaccaatgtcatgagttagtatttataaagtaagtttagggttttggccattgaacatgtgtc |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23703164 |
ggtttagggctttggtcattgaacctctacctagaccaatgtcatgagttagtatttataaagtaagtttagggttttgaccattgaacatgtgtc |
23703069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 23703192 - 23703141
Alignment:
| Q |
38 |
aatgtcatgagttagtatttataaagtaagtttagggttttggccattgaac |
89 |
Q |
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| T |
23703192 |
aatgtcatgagttagtatttataaagtaggtttagggctttggtcattgaac |
23703141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 36441071 - 36441108
Alignment:
| Q |
43 |
catgagttagtatttataaagtaagtttagggttttgg |
80 |
Q |
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| T |
36441071 |
catgagttagtatttataaagtgggtttagggttttgg |
36441108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 23232194 - 23232241
Alignment:
| Q |
32 |
tagaccaatgtcatgagttagtatttataaagtaagtttagggttttg |
79 |
Q |
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|||||||||| ||||||||||||||| || |||| ||||||||||||| |
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| T |
23232194 |
tagaccaatgccatgagttagtatttgtatagtatgtttagggttttg |
23232241 |
T |
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