View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6590_low_12 (Length: 218)
Name: NF6590_low_12
Description: NF6590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6590_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 87 - 200
Target Start/End: Original strand, 13336456 - 13336569
Alignment:
| Q |
87 |
gtttaaaggagtaatgtctatgaagattttcaacactggacattgtttcttacaaaacaacctgctaataatggtcaacatgtacttgattttgttttcc |
186 |
Q |
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| T |
13336456 |
gtttaaaggagtaatgtctatgaagattttcaacactggacattgtttctttcaaaacaacctgctaataatggtcaacatgtacttgattttgttttcc |
13336555 |
T |
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| Q |
187 |
cataggtactccat |
200 |
Q |
| |
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|||||||||||||| |
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| T |
13336556 |
cataggtactccat |
13336569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 36380638 - 36380526
Alignment:
| Q |
87 |
gtttaaaggagtaatgtctatgaagattttcaacactggacattgtttcttacaaaacaacctgctaataatggtcaacatgtacttgattttgttttcc |
186 |
Q |
| |
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|||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
36380638 |
gtttgaaggagta-tgtctatgaagatttgcaacactggacattgtttctttcaaaacaacctgctaataatggccaacttgtacttgattttgttttcc |
36380540 |
T |
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| Q |
187 |
cataggtactccat |
200 |
Q |
| |
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|||||||||||||| |
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| T |
36380539 |
cataggtactccat |
36380526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 4463068 - 4463169
Alignment:
| Q |
100 |
atgtctatgaagattttcaacactggacattgtttcttacaaaacaacctgctaataatggtcaacatgtacttga-ttttgttttcccataggtactcc |
198 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| ||||| |
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| T |
4463068 |
atgtctatgaagatttgcaacactggacattgtttctttcaaaacaacctgctaataatggtcaacttgtacttgatttttattttcccataggcactcc |
4463167 |
T |
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| Q |
199 |
at |
200 |
Q |
| |
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|| |
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|
| T |
4463168 |
at |
4463169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 294642 - 294592
Alignment:
| Q |
87 |
gtttaaaggagtaatgtctatgaagattttcaacactggacattgtttctt |
137 |
Q |
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|||| |||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
294642 |
gtttgaaggagtaatgtctatgaagatttcgaacactgaacattgtttctt |
294592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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