View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6590_low_3 (Length: 345)
Name: NF6590_low_3
Description: NF6590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6590_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 8498605 - 8498289
Alignment:
| Q |
12 |
gaagaatatgagatacccagaaagcgaaatgaagaagaaacaatgagaaagaaagggaaatagaccttgttagcgacataatcagtaaaaagttcagctt |
111 |
Q |
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| T |
8498605 |
gaagaaaatgagatacccagaaagcgaaatgaagaagaaacaatgagaaagaaagggaaatagaccttgttagcgacataatcagtaaaaagttcagctt |
8498506 |
T |
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| Q |
112 |
tggcattgaagggtttatcgccagtgttgatggatttccaaagttgtttgagagtggaaggggattgagagaaatcggtggtggaggaagaagcggggag |
211 |
Q |
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| T |
8498505 |
tggcgttgaagggtttatcgccagtgttgatggatttccaaagttgtttgagagtggaaggggattgagagaaatcggcggtggaggaagaagcggggag |
8498406 |
T |
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| Q |
212 |
agtgtgatcaatggatctggtgaaacaccagtttctgcctcgtattgggaagacgatcaatttggctttcatggtgaaaattgaaaaaccctaaacccta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8498405 |
agtgtgatcaatggatctggtgaaacaccagtttctgcctcgtattgggaagacgatcaatttggctttcatggtgaaaattgaaaaaccctaaacccta |
8498306 |
T |
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| Q |
312 |
acggtgaaggtaaaaga |
328 |
Q |
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| T |
8498305 |
acggtgaaggtaaaaga |
8498289 |
T |
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