View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6590_low_4 (Length: 344)
Name: NF6590_low_4
Description: NF6590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6590_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 36083465 - 36083128
Alignment:
| Q |
1 |
ccttaattatttgctttaatttcttggtcacatatattatgtcatcaaaaggaggctatagtataagatatgcttatttagttgttaaggtgattattca |
100 |
Q |
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| T |
36083465 |
ccttaattatttgctttaatttcttagtcacatatattatgtcatcaaaaggaggctatatgataagatatgcttatttagttgttaatgtgattattca |
36083366 |
T |
|
| Q |
101 |
aaataattgtgtttgaatttgtaagtagaaaattgctatttgaaatttgtcatacacgcttctttttcctttaactttagctcggtggtaagagattgac |
200 |
Q |
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| T |
36083365 |
aaataattgtgtttgaatttgtaagtagaaaattgctatttgaaatttgtcatacacgcttcttttttctttaactttagcttggtggtaagagattcac |
36083266 |
T |
|
| Q |
201 |
tttgtaattagaac----tgctgaattcaattttgttggttgtaaaatgtcatttttgcaactttaatttatgataatcttccttcctatatat--atat |
294 |
Q |
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||||||||| |||| | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36083265 |
tttgtaattggaacacactacttaattcaattttcttggttgtaaaatgtcatttttgcaactttaatttatgataatcttccttcctatatatatatat |
36083166 |
T |
|
| Q |
295 |
gtaaaagttttgtgaatctttttgtgaaactatatatt |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
36083165 |
gtaaaagttttgtgaatctttttgtgaaactatatatt |
36083128 |
T |
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