View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6591_low_2 (Length: 323)

Name: NF6591_low_2
Description: NF6591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6591_low_2
NF6591_low_2
[»] scaffold0091 (3 HSPs)
scaffold0091 (6-122)||(29057-29173)
scaffold0091 (216-262)||(24710-24756)
scaffold0091 (216-262)||(28907-28953)
[»] scaffold0218 (2 HSPs)
scaffold0218 (6-121)||(14378-14493)
scaffold0218 (216-262)||(14227-14273)
[»] chr3 (9 HSPs)
chr3 (6-119)||(16642300-16642413)
chr3 (6-120)||(4712799-4712913)
chr3 (6-122)||(14062777-14062893)
chr3 (6-122)||(14055036-14055152)
chr3 (17-118)||(13926858-13926960)
chr3 (216-262)||(4713023-4713069)
chr3 (216-262)||(16642123-16642169)
chr3 (216-262)||(14055248-14055294)
chr3 (216-256)||(14063009-14063049)
[»] chr6 (4 HSPs)
chr6 (6-122)||(14989374-14989490)
chr6 (6-120)||(14980262-14980376)
chr6 (216-262)||(14980486-14980532)
chr6 (85-122)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (6-122)||(51658661-51658777)
chr1 (14-122)||(13882243-13882351)
chr1 (216-262)||(13882490-13882536)
chr1 (13-107)||(1567069-1567166)
chr1 (216-262)||(51658879-51658925)
[»] chr7 (8 HSPs)
chr7 (6-122)||(48376787-48376903)
chr7 (6-122)||(16060512-16060628)
chr7 (17-122)||(4531759-4531865)
chr7 (216-262)||(9080196-9080242)
chr7 (216-262)||(16060364-16060410)
chr7 (216-262)||(48376627-48376673)
chr7 (216-262)||(16069031-16069077)
chr7 (85-122)||(9080338-9080375)
[»] chr8 (6 HSPs)
chr8 (6-122)||(23658526-23658650)
chr8 (6-122)||(23657751-23657885)
chr8 (216-262)||(23657638-23657684)
chr8 (220-262)||(23658413-23658455)
chr8 (219-262)||(17862270-17862313)
chr8 (17-52)||(29293929-29293964)
[»] scaffold1269 (1 HSPs)
scaffold1269 (6-99)||(1-94)
[»] scaffold0003 (2 HSPs)
scaffold0003 (47-122)||(130795-130870)
scaffold0003 (216-262)||(130623-130669)
[»] scaffold0319 (1 HSPs)
scaffold0319 (6-76)||(13569-13639)
[»] chr2 (1 HSPs)
chr2 (17-122)||(23656470-23656576)
[»] chr4 (2 HSPs)
chr4 (31-101)||(3576240-3576311)
chr4 (219-262)||(19728471-19728514)
[»] scaffold0063 (2 HSPs)
scaffold0063 (216-262)||(28482-28528)
scaffold0063 (84-122)||(28342-28380)
[»] scaffold1043 (1 HSPs)
scaffold1043 (217-262)||(1449-1494)
[»] scaffold0061 (1 HSPs)
scaffold0061 (219-262)||(18128-18171)


Alignment Details
Target: scaffold0091 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 29173 - 29057
Alignment:
Q  6 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaaataaatacgatgagagatgataatgtttat 105  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  29173 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 29074  T
Q  106 atgttagtgatgatgag 122  Q
    |||||||||||||||||    
T  29073 atgttagtgatgatgag 29057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 24756 - 24710
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  24756 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 24710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 28953 - 28907
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  28953 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 28907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 14493 - 14378
Alignment:
Q  6 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaaataaatacgatgagagatgataatgtttat 105  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  14493 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 14394  T
Q  106 atgttagtgatgatga 121  Q
    ||||||||||||||||    
T  14393 atgttagtgatgatga 14378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 14273 - 14227
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||||    
T  14273 gacgtataattatgatgatgacttatatgatggtgtctaatatacat 14227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 16642413 - 16642300
Alignment:
Q  6 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaaataaatacgatgagagatgataatgtttat 105  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  16642413 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 16642314  T
Q  106 atgttagtgatgat 119  Q
    ||||||||||||||    
T  16642313 atgttagtgatgat 16642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 4712799 - 4712913
Alignment:
Q  6 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaaataaatacgatgagagatgataatgtttat 105  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  4712799 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttat 4712898  T
Q  106 atgttagtgatgatg 120  Q
    |||||||||||||||    
T  4712899 atgttagtgatgatg 4712913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 14062777 - 14062893
Alignment:
Q  6 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaaataaatacgatgagagatgataatgtttat 105  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||    
T  14062777 agagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttat 14062876  T
Q  106 atgttagtgatgatgag 122  Q
    |||||||| ||||||||    
T  14062877 atgttagttatgatgag 14062893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 14055036 - 14055152
Alignment:
Q  6 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaaataaatacgatgagagatgataatgtttat 105  Q
    |||||||||||||||||| |  |||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||    
T  14055036 agagatgaataatgaggattctataatgcgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttat 14055135  T
Q  106 atgttagtgatgatgag 122  Q
    ||||||||||| |||||    
T  14055136 atgttagtgataatgag 14055152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 13926858 - 13926960
Alignment:
Q  17 atgaggaatacataatgtgacgaagagtgatgacgaa-gatattatatacatgtaattaaataaatacgatgagagatgataatgtttatatgttagtga 115  Q
    ||||||||| |||||||||| ||||||||||||| |  ||||||||||| || ||| |||||||||||||||||| |||||||||||||||| |||||||    
T  13926858 atgaggaatccataatgtgatgaagagtgatgacaattgatattatatatatttaaataaataaatacgatgagaaatgataatgtttatattttagtga 13926957  T
Q  116 tga 118  Q
    |||    
T  13926958 tga 13926960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 4713023 - 4713069
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  4713023 gacgtataattatgatgataacttgaatgatggtgtctaatatacat 4713069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 16642169 - 16642123
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  16642169 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 16642123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 14055248 - 14055294
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  14055248 gacgtataattatgatgatgacttgaatgatgatgtctaatatacat 14055294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 14063009 - 14063049
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaat 256  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  14063009 gacgtataattatgatgatgacttgaatgatggtgtctaat 14063049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 14989374 - 14989490
Alignment:
Q  6 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaaataaatacgatgagagatgataatgtttat 105  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  14989374 agagatgaataatgacgaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 14989473  T
Q  106 atgttagtgatgatgag 122  Q
    |||||||||||||||||    
T  14989474 atgttagtgatgatgag 14989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 14980262 - 14980376
Alignment:
Q  6 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaaataaatacgatgagagatgataatgtttat 105  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  14980262 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttat 14980361  T
Q  106 atgttagtgatgatg 120  Q
    |||||||||||||||    
T  14980362 atgttagtgatgatg 14980376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 14980486 - 14980532
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  14980486 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 14980532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 10906902 - 10906939
Alignment:
Q  85 atgagagatgataatgtttatatgttagtgatgatgag 122  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  10906902 atgagaaatgataatgtttatattttagtgatgatgag 10906939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 51658661 - 51658777
Alignment:
Q  6 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaaataaatacgatgagagatgataatgtttat 105  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||    
T  51658661 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatatttat 51658760  T
Q  106 atgttagtgatgatgag 122  Q
    |||||||||||||||||    
T  51658761 atgttagtgatgatgag 51658777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 13882243 - 13882351
Alignment:
Q  14 ataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaaataaatacgatgagagatgataatgtttatatgttagt 113  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13882243 ataatgaggaatccatattgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagt 13882342  T
Q  114 gatgatgag 122  Q
    |||||||||    
T  13882343 gatgatgag 13882351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 13882490 - 13882536
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  13882490 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 13882536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 1567069 - 1567166
Alignment:
Q  13 aataatgaggaat-acataat-gtgacgaagagtgatgacgaa-gatattatatacatgtaattaaataaatacgatgagagatgataatgtttatat 107  Q
    ||||||||||||| | ||||| ||||| ||||||||||||||  ||||||||||| ||||||  ||||||||||||||||| |||| ||| |||||||    
T  1567069 aataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaatacgatgagaaatgacaatatttatat 1567166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 51658879 - 51658925
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||||||| ||||||| |||| | ||||||||||||    
T  51658879 gacgtataattatgatgatgacttgaacgatgatatctaatatacat 51658925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 48376903 - 48376787
Alignment:
Q  6 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaaataaatacgatgagagatgataatgtttat 105  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  48376903 agagatgaataatgaggaatctataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttat 48376804  T
Q  106 atgttagtgatgatgag 122  Q
    |||||| ||||||||||    
T  48376803 atgttattgatgatgag 48376787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 16060628 - 16060512
Alignment:
Q  6 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaaataaatacgatgagagatgataatgtttat 105  Q
    ||||||||||||||||||||  ||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  16060628 agagatgaataatgaggaatctataatgtgatgaggagtgatgacgaagatattatatatatgtaattaaataaatatgatgagaaatgataatgtttat 16060529  T
Q  106 atgttagtgatgatgag 122  Q
    |||||||||||||||||    
T  16060528 atgttagtgatgatgag 16060512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 4531759 - 4531865
Alignment:
Q  17 atgaggaatacataatgtgacgaagagtgatgacgaa-gatattatatacatgtaattaaataaatacgatgagagatgataatgtttatatgttagtga 115  Q
    ||||||||| |||||||||||||||||||||||| |  ||||||||||| |||||| ||||||||||| |||||| || |||||| |||||| ||| |||    
T  4531759 atgaggaatccataatgtgacgaagagtgatgacaattgatattatatatatgtaaataaataaatacaatgagaaataataatgcttatattttattga 4531858  T
Q  116 tgatgag 122  Q
    |||||||    
T  4531859 tgatgag 4531865  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 9080242 - 9080196
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  9080242 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 9080196  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 16060410 - 16060364
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  16060410 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 16060364  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 48376673 - 48376627
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  48376673 gacgtataattatgatgatgacttaaatgatggtgtctaatatacat 48376627  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 16069031 - 16069077
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||||||| | |||||||||| ||||||||||||||    
T  16069031 gacgtataattatgatgatgatttgaatgatgatgtctaatatacat 16069077  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 9080375 - 9080338
Alignment:
Q  85 atgagagatgataatgtttatatgttagtgatgatgag 122  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9080375 atgagaaatgataatgtttatatgttagtgatgatgag 9080338  T

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Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 23658650 - 23658526
Alignment:
Q  6 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatataca--------tgtaattaaataaatacgatgagagatgata 97  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |        |||||||||||||||||||||||| || |||    
T  23658650 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatgtgtgtgtaattaaataaatacgatgagaaattata 23658551  T
Q  98 atgtttatatgttagtgatgatgag 122  Q
    |||||||||||||||||||||||||    
T  23658550 atgtttatatgttagtgatgatgag 23658526  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 23657885 - 23657751
Alignment:
Q  6 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatatta------------------tatacatgtaattaaataaatacgatg 87  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||                  |||| ||||||||||||||||||||||    
T  23657885 agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatatatatatatatatatgtaattaaataaatacgatg 23657786  T
Q  88 agagatgataatgtttatatgttagtgatgatgag 122  Q
    ||| || ||||||||||||||||||||||||||||    
T  23657785 agaaattataatgtttatatgttagtgatgatgag 23657751  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 23657684 - 23657638
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  23657684 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 23657638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 23658455 - 23658413
Alignment:
Q  220 tataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  23658455 tataattatgatgatgacttgaatgatggtgtctaatatacat 23658413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 17862270 - 17862313
Alignment:
Q  219 gtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    |||||||||||||||| | |||||||||| ||||||||||||||    
T  17862270 gtataattatgatgatgatttgaatgatgatgtctaatatacat 17862313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 29293964 - 29293929
Alignment:
Q  17 atgaggaatacataatgtgacgaagagtgatgacga 52  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29293964 atgaggaatccataatgtgacgaagagtgatgacga 29293929  T

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Target: scaffold1269 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 94 - 1
Alignment:
Q  6 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaaataaatacgatgagagatgataat 99  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||    
T  94 agagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataat 1  T

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Target: scaffold0003 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 130870 - 130795
Alignment:
Q  47 tgacgaagatattatatacatgtaattaaataaatacgatgagagatgataatgtttatatgttagtgatgatgag 122  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  130870 tgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 130795  T

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Target: scaffold0003; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 130669 - 130623
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  130669 gacgtataattatgatgatgacttgaatgatggtgtctaatatacat 130623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 13569 - 13639
Alignment:
Q  6 agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaaa 76  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||    
T  13569 agagatgaataatgaggaatccatgatgtgacaaagagtgatgacgaagatattatatatatgtaattaaa 13639  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 23656470 - 23656576
Alignment:
Q  17 atgaggaatacataatgtgacgaagagtgatgacgaa-gatattatatacatgtaattaaataaatacgatgagagatgataatgtttatatgttagtga 115  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||||| ||| || ||||||||||| |||||| |||||||| ||||||| ||| |||    
T  23656470 atgaggaatccataatgtgacgaagagtgatgacgattgatattatatatatgaaagtaaataaatacaatgagaaatgataatatttatattttaatga 23656569  T
Q  116 tgatgag 122  Q
    | |||||    
T  23656570 taatgag 23656576  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 3576240 - 3576311
Alignment:
Q  31 atgtgacgaagagtgatgacgaa-gatattatatacatgtaattaaataaatacgatgagagatgataatgt 101  Q
    ||||||||||||||||||||||  ||| ||||||| |||||  |||||||||||||||||||||||| ||||    
T  3576240 atgtgacgaagagtgatgacgattgattttatataaatgtatataaataaatacgatgagagatgatgatgt 3576311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 19728471 - 19728514
Alignment:
Q  219 gtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    |||||||||||||||| | |||||||||| ||||||||||||||    
T  19728471 gtataattatgatgatgatttgaatgatgatgtctaatatacat 19728514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 28482 - 28528
Alignment:
Q  216 gacgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||    
T  28482 gacgtataattatgatgatgaattgaatgatggtgtctaatatacat 28528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 28342 - 28380
Alignment:
Q  84 gatgagagatgataatgtttatatgttagtgatgatgag 122  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  28342 gatgagaaatgatgatgtttatatgttagtgatgatgag 28380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 1449 - 1494
Alignment:
Q  217 acgtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    |||||||||||||||||| | |||||||||| ||||||||||||||    
T  1449 acgtataattatgatgatgatttgaatgatgatgtctaatatacat 1494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 18128 - 18171
Alignment:
Q  219 gtataattatgatgatcacttgaatgatggtgtctaatatacat 262  Q
    |||| ||||||||||| |||||||||||||| ||||||||||||    
T  18128 gtatgattatgatgatgacttgaatgatggtatctaatatacat 18171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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