View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6591_low_3 (Length: 238)

Name: NF6591_low_3
Description: NF6591
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6591_low_3
NF6591_low_3
[»] chr7 (35 HSPs)
chr7 (1-223)||(2727419-2727641)
chr7 (1-71)||(5006568-5006638)
chr7 (1-62)||(9527149-9527210)
chr7 (1-68)||(17989082-17989149)
chr7 (17-71)||(1417205-1417259)
chr7 (1-55)||(45777230-45777284)
chr7 (8-62)||(47004037-47004091)
chr7 (17-78)||(24975838-24975899)
chr7 (29-78)||(30496638-30496687)
chr7 (17-61)||(39591542-39591586)
chr7 (28-63)||(2999140-2999175)
chr7 (27-78)||(35808989-35809040)
chr7 (1-71)||(3610799-3610869)
chr7 (8-62)||(12835003-12835057)
chr7 (17-71)||(27492736-27492790)
chr7 (17-71)||(33894564-33894617)
chr7 (17-71)||(35536048-35536102)
chr7 (17-71)||(45593794-45593848)
chr7 (34-71)||(5373166-5373203)
chr7 (18-71)||(7244643-7244696)
chr7 (17-62)||(22759136-22759181)
chr7 (29-62)||(23214837-23214870)
chr7 (1-62)||(24973894-24973955)
chr7 (34-71)||(28178910-28178947)
chr7 (17-62)||(30456525-30456570)
chr7 (29-62)||(42656465-42656498)
chr7 (1-62)||(45813239-45813300)
chr7 (27-71)||(2176850-2176894)
chr7 (34-78)||(2894751-2894795)
chr7 (18-62)||(3241391-3241435)
chr7 (34-78)||(25511561-25511605)
chr7 (8-88)||(27481360-27481440)
chr7 (18-62)||(30160966-30161010)
chr7 (27-71)||(31341135-31341179)
chr7 (34-62)||(43152994-43153022)
[»] chr2 (35 HSPs)
chr2 (17-97)||(37053509-37053589)
chr2 (17-71)||(34054976-34055030)
chr2 (1-109)||(37474659-37474767)
chr2 (8-68)||(33256684-33256744)
chr2 (17-62)||(17952776-17952821)
chr2 (36-100)||(10150667-10150731)
chr2 (2-62)||(31740019-31740079)
chr2 (17-63)||(33192142-33192188)
chr2 (2-71)||(9833096-9833165)
chr2 (18-71)||(37033985-37034038)
chr2 (17-61)||(1939407-1939451)
chr2 (17-61)||(3458608-3458652)
chr2 (1-61)||(11344343-11344403)
chr2 (18-62)||(32098384-32098428)
chr2 (17-73)||(40837503-40837559)
chr2 (8-71)||(13866830-13866893)
chr2 (7-62)||(18962103-18962158)
chr2 (17-71)||(5133713-5133767)
chr2 (8-61)||(10143123-10143176)
chr2 (34-71)||(12215748-12215785)
chr2 (17-62)||(14209227-14209272)
chr2 (29-62)||(31461388-31461421)
chr2 (29-78)||(38239638-38239687)
chr2 (34-95)||(44606180-44606241)
chr2 (35-63)||(914030-914058)
chr2 (23-63)||(1742113-1742153)
chr2 (34-78)||(5045249-5045293)
chr2 (22-62)||(9878762-9878802)
chr2 (34-78)||(13864584-13864628)
chr2 (1-61)||(25790077-25790137)
chr2 (35-71)||(26522717-26522753)
chr2 (17-61)||(28803581-28803625)
chr2 (20-95)||(29503161-29503234)
chr2 (34-78)||(33232036-33232080)
chr2 (27-71)||(33576679-33576723)
[»] chr5 (27 HSPs)
chr5 (8-71)||(28586832-28586895)
chr5 (17-71)||(37063149-37063203)
chr5 (8-62)||(14295456-14295510)
chr5 (8-78)||(35135728-35135798)
chr5 (39-100)||(36638658-36638719)
chr5 (1-71)||(39257446-39257515)
chr5 (18-71)||(7096203-7096256)
chr5 (19-63)||(10303750-10303794)
chr5 (21-61)||(29117009-29117049)
chr5 (8-63)||(35960363-35960417)
chr5 (34-68)||(7853602-7853636)
chr5 (29-63)||(35095870-35095904)
chr5 (20-61)||(985584-985625)
chr5 (34-71)||(6593241-6593278)
chr5 (34-71)||(12407753-12407790)
chr5 (10-59)||(12595808-12595857)
chr5 (22-71)||(13224370-13224419)
chr5 (34-71)||(34690815-34690852)
chr5 (34-71)||(34975319-34975356)
chr5 (17-61)||(9703315-9703359)
chr5 (34-62)||(10363700-10363728)
chr5 (34-78)||(11835211-11835255)
chr5 (34-62)||(29590832-29590860)
chr5 (17-61)||(37386566-37386610)
chr5 (7-71)||(39128580-39128644)
chr5 (17-53)||(39750102-39750138)
chr5 (17-61)||(39823196-39823240)
[»] chr4 (40 HSPs)
chr4 (19-69)||(20936079-20936129)
chr4 (1-71)||(30338651-30338721)
chr4 (8-70)||(54325103-54325165)
chr4 (2-63)||(4071831-4071892)
chr4 (8-71)||(21953214-21953277)
chr4 (18-77)||(35743239-35743298)
chr4 (27-78)||(51044544-51044595)
chr4 (10-116)||(19422314-19422420)
chr4 (1-63)||(24929442-24929504)
chr4 (17-95)||(44319867-44319944)
chr4 (1-71)||(45128369-45128439)
chr4 (17-62)||(32724069-32724114)
chr4 (34-78)||(21683571-21683615)
chr4 (20-116)||(28581988-28582083)
chr4 (1-61)||(49219090-49219150)
chr4 (8-71)||(21593078-21593140)
chr4 (1-100)||(30207630-30207728)
chr4 (12-59)||(36734846-36734893)
chr4 (34-89)||(44019446-44019501)
chr4 (20-71)||(47970259-47970310)
chr4 (18-71)||(4191680-4191734)
chr4 (33-95)||(4471088-4471150)
chr4 (1-59)||(8130127-8130185)
chr4 (19-61)||(23815321-23815363)
chr4 (17-63)||(27406000-27406046)
chr4 (8-78)||(46247152-46247222)
chr4 (17-59)||(54327524-54327566)
chr4 (22-63)||(3662297-3662338)
chr4 (34-71)||(6364090-6364127)
chr4 (8-61)||(27623586-27623639)
chr4 (8-61)||(30024651-30024704)
chr4 (38-91)||(41050617-41050670)
chr4 (1-62)||(42321938-42321999)
chr4 (17-78)||(46013375-46013436)
chr4 (18-63)||(49085938-49085983)
chr4 (1-62)||(50745950-50746011)
chr4 (34-62)||(17884018-17884046)
chr4 (17-61)||(32764892-32764936)
chr4 (36-95)||(42641727-42641787)
chr4 (34-70)||(54277406-54277442)
[»] chr6 (22 HSPs)
chr6 (1-62)||(1402946-1403007)
chr6 (3-55)||(7785803-7785855)
chr6 (8-62)||(2027472-2027526)
chr6 (17-71)||(7354145-7354199)
chr6 (1-71)||(10452419-10452489)
chr6 (1-71)||(29274288-29274358)
chr6 (8-61)||(24836265-24836318)
chr6 (18-78)||(31672544-31672604)
chr6 (34-81)||(507151-507198)
chr6 (27-62)||(30865432-30865467)
chr6 (1-63)||(3204601-3204663)
chr6 (22-68)||(24774702-24774748)
chr6 (28-61)||(5328925-5328958)
chr6 (34-91)||(8349756-8349813)
chr6 (29-70)||(29269838-29269879)
chr6 (27-71)||(2514643-2514687)
chr6 (1-61)||(4006665-4006725)
chr6 (27-71)||(4420558-4420602)
chr6 (1-61)||(28660819-28660879)
chr6 (27-59)||(30784510-30784542)
chr6 (39-95)||(31461595-31461651)
chr6 (1-61)||(34429749-34429809)
[»] chr1 (35 HSPs)
chr1 (3-61)||(15360845-15360903)
chr1 (8-61)||(44936656-44936709)
chr1 (1-61)||(29007775-29007835)
chr1 (18-70)||(39777605-39777657)
chr1 (18-62)||(42351982-42352026)
chr1 (1-61)||(48830135-48830195)
chr1 (18-61)||(14737781-14737824)
chr1 (19-62)||(17631178-17631221)
chr1 (8-71)||(45999354-45999417)
chr1 (1-71)||(17420144-17420214)
chr1 (17-71)||(23895277-23895331)
chr1 (1-59)||(27738239-27738297)
chr1 (17-71)||(29266153-29266207)
chr1 (17-59)||(30815710-30815752)
chr1 (8-62)||(33527213-33527267)
chr1 (1-71)||(36151564-36151634)
chr1 (1-55)||(46980188-46980242)
chr1 (19-61)||(49517021-49517063)
chr1 (21-62)||(3924574-3924615)
chr1 (20-69)||(4276714-4276763)
chr1 (8-61)||(4622044-4622097)
chr1 (1-62)||(5756745-5756806)
chr1 (34-71)||(7028233-7028270)
chr1 (18-71)||(26184692-26184745)
chr1 (22-71)||(37591373-37591422)
chr1 (34-71)||(46252774-46252811)
chr1 (8-61)||(47877073-47877126)
chr1 (34-71)||(50319233-50319270)
chr1 (1-61)||(4200180-4200240)
chr1 (34-62)||(4549816-4549844)
chr1 (34-62)||(4700158-4700186)
chr1 (18-62)||(23373366-23373410)
chr1 (29-61)||(36641826-36641858)
chr1 (7-71)||(43372024-43372088)
chr1 (7-59)||(44032064-44032116)
[»] chr3 (29 HSPs)
chr3 (17-62)||(49586991-49587036)
chr3 (17-61)||(26990685-26990729)
chr3 (17-71)||(1395612-1395666)
chr3 (17-91)||(38462202-38462276)
chr3 (18-71)||(40122828-40122881)
chr3 (17-61)||(53736188-53736232)
chr3 (7-62)||(15304412-15304467)
chr3 (8-71)||(20192672-20192735)
chr3 (17-71)||(22232767-22232821)
chr3 (17-59)||(25195377-25195419)
chr3 (2-76)||(32703074-32703148)
chr3 (17-63)||(34954032-34954078)
chr3 (1-63)||(45432998-45433060)
chr3 (34-71)||(2128343-2128380)
chr3 (18-71)||(3757989-3758042)
chr3 (18-59)||(6241160-6241201)
chr3 (27-60)||(20267107-20267140)
chr3 (17-62)||(24887358-24887403)
chr3 (34-71)||(33882969-33883006)
chr3 (10-78)||(36783402-36783471)
chr3 (18-71)||(44284134-44284187)
chr3 (28-61)||(54775079-54775112)
chr3 (34-62)||(905062-905090)
chr3 (17-61)||(10101551-10101595)
chr3 (17-61)||(10212476-10212520)
chr3 (1-61)||(24235742-24235802)
chr3 (34-78)||(36646474-36646518)
chr3 (19-71)||(51278234-51278286)
chr3 (18-54)||(53457335-53457371)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-61)||(27527-27587)
[»] chr8 (25 HSPs)
chr8 (1-57)||(7714197-7714253)
chr8 (27-71)||(39392746-39392790)
chr8 (29-71)||(14482143-14482185)
chr8 (17-71)||(27728096-27728150)
chr8 (1-62)||(39866795-39866857)
chr8 (18-71)||(14949829-14949882)
chr8 (8-61)||(26820150-26820203)
chr8 (22-61)||(40728498-40728537)
chr8 (27-61)||(8799356-8799390)
chr8 (22-60)||(10437837-10437875)
chr8 (27-61)||(11119084-11119118)
chr8 (21-71)||(26215437-26215487)
chr8 (8-62)||(33209286-33209340)
chr8 (17-78)||(4558732-4558793)
chr8 (33-94)||(10939325-10939386)
chr8 (29-78)||(11569546-11569595)
chr8 (17-62)||(25867036-25867081)
chr8 (34-71)||(32976358-32976395)
chr8 (34-71)||(42597342-42597379)
chr8 (34-62)||(9956904-9956932)
chr8 (10-54)||(11494111-11494155)
chr8 (17-61)||(12224974-12225018)
chr8 (29-61)||(29699205-29699237)
chr8 (1-61)||(38561677-38561737)
chr8 (38-78)||(43812454-43812494)
[»] scaffold0590 (1 HSPs)
scaffold0590 (17-71)||(1149-1203)
[»] scaffold0275 (1 HSPs)
scaffold0275 (17-71)||(2772-2826)
[»] scaffold0053 (1 HSPs)
scaffold0053 (28-71)||(20120-20163)
[»] scaffold0654 (1 HSPs)
scaffold0654 (18-119)||(6713-6815)
[»] scaffold0103 (1 HSPs)
scaffold0103 (7-61)||(51519-51573)
[»] scaffold0085 (1 HSPs)
scaffold0085 (5-55)||(34060-34110)
[»] scaffold0014 (1 HSPs)
scaffold0014 (18-119)||(116632-116734)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 2727419 - 2727641
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataagtgcttaattaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2727419 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataagtgcttaattaa 2727518  T
Q  101 cctttttattcaaacaaatcataacaactaactcattacttagagaataatttttatgtactatcagtgtaaaactttctatagcgtcaaccgatcacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2727519 cctttttattcaaacaaatcataacaactaactcattacttagagaataatttttatgtactatcagtgtaaaactttctatagcgtcaaccgatcacaa 2727618  T
Q  201 accatcacatttgtctgactttt 223  Q
    |||||||||||||||||||||||    
T  2727619 accatcacatttgtctgactttt 2727641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 5006568 - 5006638
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||||||  | ||||||||| |||||| ||||||||||||||||||||||| |||||  |||||||    
T  5006568 aaacaatttataccttatatgaaaacagtttgactttattttatcttttgttataggaatagcttatacat 5006638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 9527149 - 9527210
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||| |||||||| ||||||||| |||||| ||||||| |||||||||||||||| ||||    
T  9527149 aaacaacttatagtttatatgaaaacagtttgactttattatatcttttgttatagatatag 9527210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 17989082 - 17989149
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctata 68  Q
    |||||| |||||||| ||||||||| |||||| ||||||||||| |||||||||| || |||| ||||    
T  17989082 aaacaaattatagtttatatgaaaacagtttgactttattttatattttgttataaaactagtttata 17989149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 1417259 - 1417205
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||| | |||| |||||||||||||||||||||| ||||||| |||||||    
T  1417259 atatgaaaacaatttgactttattttatcttttgttatataaatagtttatacat 1417205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 45777230 - 45777284
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttata 55  Q
    |||||| |||||||| ||||||||| |||||| ||| ||||||||||||||||||    
T  45777230 aaacaacttatagtttatatgaaaacagtttgacttaattttatcttttgttata 45777284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 47004091 - 47004037
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||||| |||| |||| |||||| ||||||||||||| |||||||||||||||    
T  47004091 ttatagttcatataaaaatagtttgactttattttatctattgttatagaaatag 47004037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 24975899 - 24975838
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    |||| |||| |||| ||||||||||||||||||||||||||| |||  ||||||||| ||||    
T  24975899 atataaaaacagttcgcctttattttatcttttgttatagaagtagattatacatcagcact 24975838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 30496687 - 30496638
Alignment:
Q  29 tttgcctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    |||| ||||||||||| |||||||||||||||||| ||||||| ||||||    
T  30496687 tttgactttattttatattttgttatagaaatagtttatacataaacact 30496638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 39591542 - 39591586
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||||| | |||| ||||||||||||||||||||||||||||    
T  39591542 atatgaaaacaatttgactttattttatcttttgttatagaaata 39591586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 2999175 - 2999140
Alignment:
Q  28 gtttgcctttattttatcttttgttatagaaatagt 63  Q
    ||||| ||||||||||||||||||||||||||||||    
T  2999175 gtttgactttattttatcttttgttatagaaatagt 2999140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 35808989 - 35809040
Alignment:
Q  27 agtttgcctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    |||||| || ||||||||||||||||||||||||||  ||||||| ||||||    
T  35808989 agtttgactatattttatcttttgttatagaaatagcttatacataaacact 35809040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 3610799 - 3610869
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| |||||| | |||  |||| |||||||||| ||||||||||||||| |||||||||  |||||||    
T  3610799 aaacaacttatagcttataccaaaacagtttgccttcattttatcttttgttgtagaaatagcttatacat 3610869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 12835003 - 12835057
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||| | ||||||||| | |||| ||||||||||||||||||| |||||||||    
T  12835003 ttatagctaatatgaaaacaatttgactttattttatcttttgttgtagaaatag 12835057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 27492790 - 27492736
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||| ||||||  ||||||| | ||||||||||||||||||| |||||||    
T  27492790 atatgaaaaaagtttgattttatttgaacttttgttatagaaatagtttatacat 27492736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 33894617 - 33894564
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||| |||||| ||| |||||||||||||||||||||||||  |||||||    
T  33894617 atatgaaaacagtttgactt-attttatcttttgttatagaaatagcttatacat 33894564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 35536102 - 35536048
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||| | |||| |||||||||||||| ||||||||||||||  |||||||    
T  35536102 atatgaaaacaatttgactttattttatcttatgttatagaaatagcttatacat 35536048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 45593794 - 45593848
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||| |||||| ||||||||||| |||||||| ||||||||  |||||||    
T  45593794 atatgaaaacagtttgactttattttatgttttgttacagaaatagcttatacat 45593848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 5373203 - 5373166
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||||||||||||||||||||||||  |||||||    
T  5373203 ctttattttatcttttgttatagaaatagcatatacat 5373166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 7244696 - 7244643
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||| |||||| |||| |||||||||||| |||||||||||  |||||||    
T  7244696 tatgaaaacagtttgactttcttttatcttttgatatagaaatagcttatacat 7244643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 22759181 - 22759136
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    ||||||||| | ||| ||||||||||||||||||||||| ||||||    
T  22759181 atatgaaaacaattttcctttattttatcttttgttatacaaatag 22759136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 23214870 - 23214837
Alignment:
Q  29 tttgcctttattttatcttttgttatagaaatag 62  Q
    |||||||||| |||||||||||||||||||||||    
T  23214870 tttgcctttagtttatcttttgttatagaaatag 23214837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 24973955 - 24973894
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    ||||| ||||||||  ||||| ||| | ||||  ||||||||||||||||||||||||||||    
T  24973955 aaacagtttatagtctatatggaaacaatttgaatttattttatcttttgttatagaaatag 24973894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 28178947 - 28178910
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||||||||||||||||||||||||  |||||||    
T  28178947 ctttattttatcttttgttatagaaatagcttatacat 28178910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 30456525 - 30456570
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    ||||||||| | |||| ||||||||||||||||||| |||||||||    
T  30456525 atatgaaaacaatttgactttattttatcttttgttttagaaatag 30456570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 42656498 - 42656465
Alignment:
Q  29 tttgcctttattttatcttttgttatagaaatag 62  Q
    |||| |||||||||||||||||||||||||||||    
T  42656498 tttgactttattttatcttttgttatagaaatag 42656465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 45813239 - 45813300
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||| |||||| | ||||||||| |  ||| ||||||||||||||||| |||||||||||    
T  45813239 aaacaacttatagattatatgaaaacaagttgactttattttatcttttggtatagaaatag 45813300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 2176894 - 2176850
Alignment:
Q  27 agtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| ||||||||||||||||||||  |||||||| |||||||    
T  2176894 agtttgactttattttatcttttgttactgaaatagtgtatacat 2176850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 2894795 - 2894751
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    ||||| |||||||||||||||||||||||  ||||||| ||||||    
T  2894795 ctttaatttatcttttgttatagaaatagcttatacatgaacact 2894751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 3241435 - 3241391
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||||| |||||| ||||||||| | |||||||||||||||||    
T  3241435 tatgaaaacagtttgactttattttttattttgttatagaaatag 3241391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 25511605 - 25511561
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    |||||||| ||||||||||||||||||| | |||||| |||||||    
T  25511605 ctttatttcatcttttgttatagaaataatttatacaacaacact 25511561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 27481360 - 27481440
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataa 88  Q
    |||||| | ||||| ||| |||||| |||  ||||||| ||||||||||||||||  ||||||| |||||| || ||||||    
T  27481360 ttatagcttatatggaaacagtttgacttcgttttatcctttgttatagaaatagcttatacataaacacttatataataa 27481440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 30160966 - 30161010
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||||| |||||| |||||||||||||||||  ||||||||||    
T  30160966 tatgaaaacagtttgactttattttatcttttgccatagaaatag 30161010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 31341179 - 31341135
Alignment:
Q  27 agtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| |||||||||||||||||||||| ||||||  |||||||    
T  31341179 agtttgactttattttatcttttgttatacaaatagcttatacat 31341135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 43152994 - 43153022
Alignment:
Q  34 ctttattttatcttttgttatagaaatag 62  Q
    |||||||||||||||||||||||||||||    
T  43152994 ctttattttatcttttgttatagaaatag 43153022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 37053589 - 37053509
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataagtgcttaat 97  Q
    ||||||||| |||||| ||||||||||| || ||||||||||||||||||||||| | |||| || | |||||||||||||    
T  37053589 atatgaaaacagtttgactttattttattttctgttatagaaatagtctatacataagcacttatatgataagtgcttaat 37053509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 34054976 - 34055030
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  34054976 atatgtaaacagtttgcctttattttatcttttgttatagaaatagcctatacat 34055030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 37474767 - 37474659
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacac-taatctaataagtgcttaatta 99  Q
    ||||||||||||||| ||||||||| || | | ||||||||||| ||||||||| |||||||| ||| ||| ||||| ||| || |||||||||||||||    
T  37474767 aaacaatttatagtttatatgaaaacagatcgactttattttattttttgttatcgaaatagtttatgcataaacacttaagct-ataagtgcttaatta 37474669  T
Q  100 acctttttat 109  Q
    | || |||||    
T  37474668 agctatttat 37474659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 33256744 - 33256684
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctata 68  Q
    |||||||| ||||||||| |||||| ||||||||||||| ||||||||||| |||||||||    
T  33256744 ttatagtttatatgaaaacagtttgactttattttatctattgttatagaagtagtctata 33256684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 17952776 - 17952821
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  17952776 atatgaaaatagtttgactttattttatcttttgttatagaaatag 17952821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 10150731 - 10150667
Alignment:
Q  36 ttattttatcttttgttatagaaatagtctatacatcaacactaatctaataagtgcttaattaa 100  Q
    |||||||||||||| |||||||||||   ||||||| |||||| || ||||||||||||||||||    
T  10150731 ttattttatcttttattatagaaataacttatacataaacacttatataataagtgcttaattaa 10150667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 31740019 - 31740079
Alignment:
Q  2 aacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    ||||| |||||| | ||||||||| |||||| ||||||||||||||| |||||||||||||    
T  31740019 aacaacttatagcttatatgaaaatagtttgactttattttatctttagttatagaaatag 31740079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 33192188 - 33192142
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagt 63  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||    
T  33192188 atatgaaaacagtttgactttattttatcttatgttatagaaatagt 33192142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 9833165 - 9833096
Alignment:
Q  2 aacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||| |||||||| ||||||||| | ||| | |||||||||||||||||||| |||||||  |||||||    
T  9833165 aacaagttatagtttatatgaaaaaaatttacatttattttatcttttgttatggaaatagattatacat 9833096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 37034038 - 37033985
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||  ||||| |||||||||||||||| ||||||||||||| |||||||    
T  37034038 tatgaaaatcgtttgactttattttatctttttttatagaaatagtttatacat 37033985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 1939407 - 1939451
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||    
T  1939407 atatgaaaatagtttcactttattttatcttttgttatagaaata 1939451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 3458652 - 3458608
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||||| |||||| |||||||||||||||||||||| |||||    
T  3458652 atatgaaaaaagtttgactttattttatcttttgttataaaaata 3458608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11344343 - 11344403
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||||||||| |  |||||||| | |||| |||| |||||||||||||||||||||||    
T  11344343 aaacaatttatagcttgtatgaaaacaatttgactttcttttatcttttgttatagaaata 11344403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 32098384 - 32098428
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||||| | |||| |||||||||||||||||||||||||||||    
T  32098384 tatgaaaacactttgactttattttatcttttgttatagaaatag 32098428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 40837503 - 40837559
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatca 73  Q
    ||||||||| | |||| ||||| |||||||||||||||||||||||  |||||||||    
T  40837503 atatgaaaacaatttgactttaatttatcttttgttatagaaatagcttatacatca 40837559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 13866893 - 13866830
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| | |||| |||| |||||| ||| ||||||||||||| |||||||||||| |||||||    
T  13866893 ttatagattatataaaaacagtttgacttaattttatcttttgctatagaaatagtttatacat 13866830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 18962103 - 18962158
Alignment:
Q  7 tttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    ||||||| | ||||||||| |||||  |||||||||||||||||||||| ||||||    
T  18962103 tttatagcttatatgaaaacagtttaactttattttatcttttgttataaaaatag 18962158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 5133767 - 5133713
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||| |||| |||||  |||||||||||||||||||||||||||||  |||||||    
T  5133767 atataaaaacagtttatctttattttatcttttgttatagaaatagcttatacat 5133713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 10143176 - 10143123
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||| | |||| |||| |||||| ||| ||||||||||||||||||||||||    
T  10143176 ttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaata 10143123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 12215785 - 12215748
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  12215785 ctttattttatcttttgttgtagaaatagtttatacat 12215748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 14209272 - 14209227
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    ||||||||| ||||||  |||||||||||||||||||| |||||||    
T  14209272 atatgaaaacagtttgaatttattttatcttttgttattgaaatag 14209227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 31461421 - 31461388
Alignment:
Q  29 tttgcctttattttatcttttgttatagaaatag 62  Q
    |||| |||||||||||||||||||||||||||||    
T  31461421 tttgactttattttatcttttgttatagaaatag 31461388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 38239638 - 38239687
Alignment:
Q  29 tttgcctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    |||| ||| |||||||||||||||||||||||||  ||||||| ||||||    
T  38239638 tttgacttgattttatcttttgttatagaaatagcttatacataaacact 38239687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 44606180 - 44606241
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataagtgctta 95  Q
    |||||||||||||||||||||  ||||||  ||||||| |||||| || ||||||| |||||    
T  44606180 ctttattttatcttttgttatgaaaatagcttatacataaacacttatataataagcgctta 44606241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 914058 - 914030
Alignment:
Q  35 tttattttatcttttgttatagaaatagt 63  Q
    |||||||||||||||||||||||||||||    
T  914058 tttattttatcttttgttatagaaatagt 914030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 1742113 - 1742153
Alignment:
Q  23 aaagagtttgcctttattttatcttttgttatagaaatagt 63  Q
    |||||||||| ||| ||||||| ||||||||||||||||||    
T  1742113 aaagagtttgacttcattttatattttgttatagaaatagt 1742153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 5045249 - 5045293
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    |||||||||||||||||||||| ||||||  ||||||| ||||||    
T  5045249 ctttattttatcttttgttataaaaatagcttatacataaacact 5045293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 9878762 - 9878802
Alignment:
Q  22 aaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||| ||||||  ||||||||||||||||||||||||||||    
T  9878762 aaaatagtttgagtttattttatcttttgttatagaaatag 9878802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 13864628 - 13864584
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    |||||||||| ||||||||||||||||||  ||||||| ||||||    
T  13864628 ctttattttaccttttgttatagaaatagcttatacataaacact 13864584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 25790137 - 25790077
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||||| ||| | ||||||||| |||||| ||| | |||||||||| |||||||||||    
T  25790137 aaacaatttgtagcttatatgaaaacagtttgacttcactttatctttttttatagaaata 25790077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 26522717 - 26522753
Alignment:
Q  35 tttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| |||||||||||||||||||||| |||||||    
T  26522717 tttattatatcttttgttatagaaatagtttatacat 26522753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 28803581 - 28803625
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||||  |||||| ||||||||||||||||||||| ||||||    
T  28803581 atatgaaatcagtttgactttattttatcttttgttatcgaaata 28803625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 29503161 - 29503234
Alignment:
Q  20 tgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataagtgctta 95  Q
    |||||| |||||| ||||||||||||  ||||||||||||||   ||||||| ||||||  | |||||||||||||    
T  29503161 tgaaaatagtttgactttattttatc--ttgttatagaaatatcatatacataaacacttctataataagtgctta 29503234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 33232036 - 33232080
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    |||||||||||||||| |||||||| ||| |||||||| ||||||    
T  33232036 ctttattttatcttttattatagaactagcctatacatgaacact 33232080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 33576679 - 33576723
Alignment:
Q  27 agtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| ||||||| ||||||||||||||||||||  ||||||||    
T  33576679 agtttgactttattgtatcttttgttatagaaataacctatacat 33576723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 28586832 - 28586895
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||| || ||||||||| |||||| |||||||||||||||||||||||||||||| |||||||    
T  28586832 ttataatttatatgaaaacagtttgactttattttatcttttgttatagaaatagtgtatacat 28586895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 37063149 - 37063203
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||| |||||||    
T  37063149 atatgaaaatagtttgactttattttatcttttgttatagaaatagtttatacat 37063203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 14295510 - 14295456
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||| | ||||||||| |||||| |||||||||||||||||||||||||||||    
T  14295510 ttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaatag 14295456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 35135728 - 35135798
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    |||||| | ||||||||| |||||| ||||||||||||||||||||||||||||   ||||||| ||||||    
T  35135728 ttatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataaacact 35135798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 36638719 - 36638658
Alignment:
Q  39 ttttatcttttgttatagaaatagtctatacatcaacactaatctaataagtgcttaattaa 100  Q
    ||||||||||||||||||||||||| ||||||| |||||  || | ||||||||||||||||    
T  36638719 ttttatcttttgttatagaaatagtttatacattaacacctatatgataagtgcttaattaa 36638658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 39257446 - 39257515
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| |||||||| |||||||||| ||||| |||||||||| ||||||||||||| ||||  |||||||    
T  39257446 aaacaacttatagtttatatgaaaag-gtttgactttattttaccttttgttatagagatagcatatacat 39257515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 7096203 - 7096256
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||  ||||| |||||||||||||||||||||||||||||  |||||||    
T  7096203 tatgaaaatggtttgactttattttatcttttgttatagaaatagcttatacat 7096256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 10303794 - 10303750
Alignment:
Q  19 atgaaaagagtttgcctttattttatcttttgttatagaaatagt 63  Q
    ||||||| | |||| ||||||||||||||||||||||||||||||    
T  10303794 atgaaaacaatttgactttattttatcttttgttatagaaatagt 10303750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 29117009 - 29117049
Alignment:
Q  21 gaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  29117009 gaaaacagtttgactttattttatcttttgttatagaaata 29117049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 35960417 - 35960363
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagt 63  Q
    |||||||| ||||||||  |||||| |||||||||||||||| |||||||||||||    
T  35960417 ttatagtttatatgaaat-agtttgactttattttatcttttattatagaaatagt 35960363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 7853636 - 7853602
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctata 68  Q
    |||||||||||||||||||||||||||||| ||||    
T  7853636 ctttattttatcttttgttatagaaatagtttata 7853602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 35095870 - 35095904
Alignment:
Q  29 tttgcctttattttatcttttgttatagaaatagt 63  Q
    |||| ||||||||||||||||||||||||||||||    
T  35095870 tttgactttattttatcttttgttatagaaatagt 35095904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 985625 - 985584
Alignment:
Q  20 tgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||| |||||| ||||||||||||||||||||| ||||||    
T  985625 tgaaaacagtttgactttattttatcttttgttatggaaata 985584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 6593278 - 6593241
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||||||||||||||||||||| || |||||||    
T  6593278 ctttattttatcttttgttatagaaattgtttatacat 6593241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 12407753 - 12407790
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||||||||||||||||||||||||  |||||||    
T  12407753 ctttattttatcttttgttatagaaatagcttatacat 12407790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 12595808 - 12595857
Alignment:
Q  10 atagttgatatgaaaagagtttgcctttattttatcttttgttatagaaa 59  Q
    |||||| ||||||||| | |||  ||||||||||||||||||||||||||    
T  12595808 atagtttatatgaaaacaatttaactttattttatcttttgttatagaaa 12595857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 13224419 - 13224370
Alignment:
Q  22 aaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||| |  ||||||||||||||||||||||||||||  |||||||    
T  13224419 aaaagagttggattttattttatcttttgttatagaaatagcttatacat 13224370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 34690852 - 34690815
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||||||||||||||||||||||||  |||||||    
T  34690852 ctttattttatcttttgttatagaaatagcgtatacat 34690815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 34975356 - 34975319
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  34975356 ctttatttcatcttttgttatagaaatagtttatacat 34975319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 9703315 - 9703359
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||||| ||||||| ||||||||||||| |||||| |||||||    
T  9703315 atatgaaatgagtttgactttattttatctcttgttacagaaata 9703359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 10363728 - 10363700
Alignment:
Q  34 ctttattttatcttttgttatagaaatag 62  Q
    |||||||||||||||||||||||||||||    
T  10363728 ctttattttatcttttgttatagaaatag 10363700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 11835255 - 11835211
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    |||||||||||||||||||||| |||| || ||||||| ||||||    
T  11835255 ctttattttatcttttgttataaaaatggtttatacataaacact 11835211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 29590832 - 29590860
Alignment:
Q  34 ctttattttatcttttgttatagaaatag 62  Q
    |||||||||||||||||||||||||||||    
T  29590832 ctttattttatcttttgttatagaaatag 29590860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 37386610 - 37386566
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||||| |||||||||||| ||| |||||| |||||||||||    
T  37386610 atatgaaaatagtttgcctttaatttttcttttattatagaaata 37386566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 39128644 - 39128580
Alignment:
Q  7 tttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||| || ||| || | |||| ||||||||||||||||||||||||| |||  |||||||    
T  39128644 tttatagtttatttgagaacaatttgactttattttatcttttgttatagaattagcttatacat 39128580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 39750138 - 39750102
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgtta 53  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  39750138 atatgaaaatagtttgactttattttatcttttgtta 39750102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 39823196 - 39823240
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||||  |||||| |||||||||||||||||||||| |||||    
T  39823196 atatgaaagtagtttgactttattttatcttttgttatataaata 39823240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 20936079 - 20936129
Alignment:
Q  19 atgaaaagagtttgcctttattttatcttttgttatagaaatagtctatac 69  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  20936079 atgaaaatagtttgactttattttatcttttgttatagaaatagtctatac 20936129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30338651 - 30338721
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||| ||||||| | ||||||||| |||||  ||||||| |||||||||||||||||||||| |||||||    
T  30338651 aaacagtttatagcttatatgaaaacagtttaactttattctatcttttgttatagaaatagtttatacat 30338721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 54325103 - 54325165
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctataca 70  Q
    |||||| | ||||||||| |||||| |||||||||||||||||| ||||||||||| ||||||    
T  54325103 ttatagcttatatgaaaacagtttgactttattttatcttttgtaatagaaatagtttataca 54325165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 4071892 - 4071831
Alignment:
Q  2 aacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagt 63  Q
    ||||| |||||| | ||||||||| | |||| ||||||||||||||||||||||||||||||    
T  4071892 aacaacttatagcttatatgaaaataatttgactttattttatcttttgttatagaaatagt 4071831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 21953277 - 21953214
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| | |||| ||||||||||| |||||||||  ||||||||||||||||||| |||||||    
T  21953277 ttatagcttatataaaaagagtttgactttattttcccttttgttatagaaatagtttatacat 21953214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 35743298 - 35743239
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacac 77  Q
    |||||||  |||||||||||||||||||||||||||||||||||   | |||||||||||    
T  35743298 tatgaaagtagtttgcctttattttatcttttgttatagaaataacttgtacatcaacac 35743239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 51044544 - 51044595
Alignment:
Q  27 agtttgcctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    |||||| |||||||||||||||||||||||||||||  ||||||| ||||||    
T  51044544 agtttgactttattttatcttttgttatagaaatagcttatacataaacact 51044595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 19422420 - 19422314
Alignment:
Q  10 atagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataagtgcttaattaacctttttat 109  Q
    |||||| |||||||||  ||||| ||||||| ||||||||||||||||||||   ||||||| | || | || | ||||| |||||||||| || |||||    
T  19422420 atagtttatatgaaaaatgtttgactttattatatcttttgttatagaaataacttatacataagcatttatatgataagcgcttaattaagctgtttat 19422321  T
Q  110 tcaaaca 116  Q
     ||||||    
T  19422320 ccaaaca 19422314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 24929504 - 24929442
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagt 63  Q
    |||||| |||||| |  |||||||| |||| | ||||||||||||||||||||||||||||||    
T  24929504 aaacaacttatagcttttatgaaaacagttagactttattttatcttttgttatagaaatagt 24929442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 44319944 - 44319867
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataagtgctta 95  Q
    ||||||||| |||| | |||||||||||||||| ||||||||||||| ||||||| | |||| || | |||||||||||    
T  44319944 atatgaaaacagttcgactttattttatctttt-ttatagaaatagtttatacatgagcacttatatgataagtgctta 44319867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 45128369 - 45128439
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||||||| | |||||| || | ||||  || |||||||||||||||||||||||||| |||||||    
T  45128369 aaacaatttatagcttatatgagaataatttgatttgattttatcttttgttatagaaatagtttatacat 45128439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 32724114 - 32724069
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||    
T  32724114 atatgaaaatagtttgactttattttatcttttgtaatagaaatag 32724069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 21683571 - 21683615
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||||    
T  21683571 ctttatcttatcttttgttatagaaatagtttatacataaacact 21683615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 28581988 - 28582083
Alignment:
Q  20 tgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataagtgcttaattaacctttttattcaaaca 116  Q
    |||||| |||||| ||||||||||||||||| || | ||||||| ||||||| ||||||  | | |||||||||||||||  || |||| |||||||    
T  28581988 tgaaaatagtttgactttattttatcttttgcta-aaaaatagtttatacataaacacttctatgataagtgcttaattacactgtttactcaaaca 28582083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 49219150 - 49219090
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||| |||||| | ||||||||| | |||| ||||||||||| ||||||||||||||||    
T  49219150 aaacaacttatagcttatatgaaaataatttgactttattttatattttgttatagaaata 49219090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 21593078 - 21593140
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| | ||||||||| |||| | ||||||||||||||| |||||||||||||| |||||||    
T  21593078 ttatagcttatatgaaaatagtt-gactttattttatctttagttatagaaatagtttatacat 21593140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 30207630 - 30207728
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataagtgcttaattaa 100  Q
    |||||| |||||| | ||||||||| ||||||  |||||||||| ||||||||||||| ||   ||||||| | |||| || | ||||||||||||||||    
T  30207630 aaacaacttatagcttatatgaaaacagtttga-tttattttattttttgttatagaactaacatatacataagcacttatatgataagtgcttaattaa 30207728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 36734893 - 36734846
Alignment:
Q  12 agttgatatgaaaagagtttgcctttattttatcttttgttatagaaa 59  Q
    |||| ||||||||| |||||| |||||||||| |||||||||||||||    
T  36734893 agtttatatgaaaatagtttgactttattttaccttttgttatagaaa 36734846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 44019501 - 44019446
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataag 89  Q
    |||||||||||||||| |||||||||||| ||||||||  ||||| |||| |||||    
T  44019501 ctttattttatcttttcttatagaaatagcctatacatacacacttatctgataag 44019446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 47970310 - 47970259
Alignment:
Q  20 tgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| |||||| ||| |||||||||||||||||||||||||  |||||||    
T  47970310 tgaaaatagtttgacttcattttatcttttgttatagaaatagcttatacat 47970259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 4191734 - 4191680
Alignment:
Q  18 tatgaaaagagtttgcctttatttt-atcttttgttatagaaatagtctatacat 71  Q
    |||||||| |||||| ||||||||| ||||||||||||||||||||  |||||||    
T  4191734 tatgaaaacagtttgactttatttttatcttttgttatagaaatagcttatacat 4191680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 4471150 - 4471088
Alignment:
Q  33 cctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataagtgctta 95  Q
    ||||||||||||||||||||||| ||||||| ||| ||| | |||| || |||||| ||||||    
T  4471150 cctttattttatcttttgttataaaaatagtttatgcataagcacttatataataattgctta 4471088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8130185 - 8130127
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaa 59  Q
    ||||| ||||||| | ||||||||| | |||| |||||| |||||||||||||||||||    
T  8130185 aaacagtttatagcttatatgaaaataatttgactttatgttatcttttgttatagaaa 8130127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 23815363 - 23815321
Alignment:
Q  19 atgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||| |||||| | ||||||||||||||||||||||||||    
T  23815363 atgaaaacagtttgacattattttatcttttgttatagaaata 23815321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 27406046 - 27406000
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagt 63  Q
    ||||| ||| |||||||||||||||||||||||  ||||||||||||    
T  27406046 atatgcaaatagtttgcctttattttatcttttactatagaaatagt 27406000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 46247222 - 46247152
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    ||||| || |||| |||| |||||| |||||||||||||||||||  ||||||||| || |||| ||||||    
T  46247222 ttataatttatataaaaacagtttgactttattttatcttttgttccagaaatagtttacacataaacact 46247152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 54327524 - 54327566
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaa 59  Q
    ||||||||| |||||| |||| |||||||||||||||||||||    
T  54327524 atatgaaaacagtttgactttgttttatcttttgttatagaaa 54327566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 3662338 - 3662297
Alignment:
Q  22 aaaagagtttgcctttattttatcttttgttatagaaatagt 63  Q
    |||| |||||| ||||||||||||||||||||||| ||||||    
T  3662338 aaaacagtttgactttattttatcttttgttataggaatagt 3662297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 6364127 - 6364090
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||||||||||||||||||||||||  |||||||    
T  6364127 ctttattttatcttttgttatagaaatagcttatacat 6364090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 27623639 - 27623586
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||| | |||| |||| |||||| |||||||||||||||||||||| |||||    
T  27623639 ttatagcttatattaaaatagtttgactttattttatcttttgttatacaaata 27623586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 30024704 - 30024651
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||| | ||||||||| | |||  ||||||||||||||||||||||||||||    
T  30024704 ttatagcttatatgaaaacaattttactttattttatcttttgttatagaaata 30024651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 41050670 - 41050617
Alignment:
Q  38 attttatcttttgttatagaaatagtctatacatcaacactaatctaataagtg 91  Q
    |||| ||||||||||||||||||||| ||||||| |||||| || | |||||||    
T  41050670 atttcatcttttgttatagaaatagtttatacattaacacttatatgataagtg 41050617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 42321938 - 42321999
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||| ||||| || ||||||||| | |||| |||||||||||| ||||||||| ||||||    
T  42321938 aaacaacttataatttatatgaaaacaatttgactttattttatcatttgttataaaaatag 42321999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 46013375 - 46013436
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    |||| |||| |||||| |||||||||||||||||||  ||||||||| || |||| ||||||    
T  46013375 atataaaaacagtttgactttattttatcttttgttccagaaatagtttacacataaacact 46013436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 49085983 - 49085938
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatagt 63  Q
    |||||||| |||||| | |||||||||||||||||||| |||||||    
T  49085983 tatgaaaatagtttgacattattttatcttttgttatataaatagt 49085938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 50746011 - 50745950
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||| || ||||| |||| |||| ||||||  ||||||||||||||||||||| ||||||    
T  50746011 aaacaacttgtagtttatataaaaacagtttgattttattttatcttttgttataaaaatag 50745950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 17884046 - 17884018
Alignment:
Q  34 ctttattttatcttttgttatagaaatag 62  Q
    |||||||||||||||||||||||||||||    
T  17884046 ctttattttatcttttgttatagaaatag 17884018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 32764936 - 32764892
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||| |||| ||| |||||||||||| ||||||||||||||||||    
T  32764936 atataaaaacagtctgcctttattttttcttttgttatagaaata 32764892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 95
Target Start/End: Original strand, 42641727 - 42641787
Alignment:
Q  36 ttattttatcttttgttatagaaatagtctatacatcaacactaatc-taataagtgctta 95  Q
    ||||||||||||||||||| |||||||  ||||||| |||||| ||| | |||||||||||    
T  42641727 ttattttatcttttgttatggaaatagcttatacataaacacttatcatgataagtgctta 42641787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 54277406 - 54277442
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctataca 70  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  54277406 ctttattttatcttttgttatagaagtagtttataca 54277442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1403007 - 1402946
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    ||||||||||||| | ||||||||| |||||  |||||||||||||||||||||||||||||    
T  1403007 aaacaatttatagcttatatgaaaatagtttaactttattttatcttttgttatagaaatag 1402946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 7785803 - 7785855
Alignment:
Q  3 acaatttatagttgatatgaaaagagtttgcctttattttatcttttgttata 55  Q
    ||||||||||| | |||||||||||||||| ||||||||||||||||| ||||    
T  7785803 acaatttatagcttatatgaaaagagtttgactttattttatcttttggtata 7785855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 2027472 - 2027526
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||| | ||||||||| |||||| |||||||||||||||||||||| ||||||    
T  2027472 ttataggttatatgaaaatagtttgactttattttatcttttgttataaaaatag 2027526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 7354199 - 7354145
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||| |||| |  ||||||||||||||||||||||||||||| |||||||    
T  7354199 atatgaaaatagttcgattttattttatcttttgttatagaaatagtttatacat 7354145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 10452419 - 10452489
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| |||||| | ||||||||| ||||||  |||||||||| |||||||||||||||||  |||||||    
T  10452419 aaacaacttatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagcttatacat 10452489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29274288 - 29274358
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||| ||||||| | ||||||||| | |||| ||||||||||||||||| |||||||||||  |||||||    
T  29274288 aaacagtttatagcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacat 29274358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 24836265 - 24836318
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||||| ||| ||||| | |||| ||||||||||||||||||||||||||||    
T  24836265 ttatagtttatacgaaaacaatttgactttattttatcttttgttatagaaata 24836318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 31672544 - 31672604
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    |||||||| |||||| ||||||||||| |||||| || |||||||| ||||||| ||||||    
T  31672544 tatgaaaacagtttgactttattttattttttgtcatggaaatagtttatacataaacact 31672604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 507198 - 507151
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacatcaacactaat 81  Q
    |||||||||||||||||||||||||||| | ||||||| | |||||||    
T  507198 ctttattttatcttttgttatagaaataatttatacataagcactaat 507151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 30865467 - 30865432
Alignment:
Q  27 agtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||| |||||||||||||||||||||||||||||    
T  30865467 agtttgactttattttatcttttgttatagaaatag 30865432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 3204601 - 3204663
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagt 63  Q
    ||||||||| ||| | ||||||||| |||| | |||||||||||||||| |||||||| ||||    
T  3204601 aaacaatttctagcttatatgaaaacagttcgactttattttatcttttattatagaagtagt 3204663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 24774748 - 24774702
Alignment:
Q  22 aaaagagtttgcctttattttatcttttgttatagaaatagtctata 68  Q
    |||| |||||| ||||||||||| |||||||||||||||||| ||||    
T  24774748 aaaacagtttgactttattttatattttgttatagaaatagtttata 24774702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 5328958 - 5328925
Alignment:
Q  28 gtttgcctttattttatcttttgttatagaaata 61  Q
    ||||| ||||||||||||||||||||||||||||    
T  5328958 gtttgactttattttatcttttgttatagaaata 5328925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 8349756 - 8349813
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataagtg 91  Q
    |||||||||||||||||||| ||||||||| ||||||  |||||| || | |||||||    
T  8349756 ctttattttatcttttgttagagaaatagtttatacacaaacacttatatgataagtg 8349813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 29269879 - 29269838
Alignment:
Q  29 tttgcctttattttatcttttgttatagaaatagtctataca 70  Q
    |||| |||||||||||||| ||||||||||||||| ||||||    
T  29269879 tttgactttattttatcttctgttatagaaatagtttataca 29269838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 2514687 - 2514643
Alignment:
Q  27 agtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| |||||||||||||||| ||||||||||||  |||||||    
T  2514687 agtttgactttattttatcttttattatagaaatagcttatacat 2514643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4006725 - 4006665
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||| |||||| | |||| |||| | |||| |||||||||||| |||||||||||||||    
T  4006725 aaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatagaaata 4006665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 4420602 - 4420558
Alignment:
Q  27 agtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| ||||||||||||||||||||||||| |||  |||||||    
T  4420602 agtttgactttattttatcttttgttatagaagtagcttatacat 4420558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 28660819 - 28660879
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||||||||| || ||||||||| | |||  ||||||||||||| |||||||| |||||    
T  28660819 aaacaatttataatttatatgaaaataatttaactttattttatctattgttataaaaata 28660879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 30784542 - 30784510
Alignment:
Q  27 agtttgcctttattttatcttttgttatagaaa 59  Q
    |||||| ||||||||||||||||||||||||||    
T  30784542 agtttgactttattttatcttttgttatagaaa 30784510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 31461651 - 31461595
Alignment:
Q  39 ttttatcttttgttatagaaatagtctatacatcaacactaatctaataagtgctta 95  Q
    ||||||||||||||||||||||||  ||||||| | |||| ||  ||||||||||||    
T  31461651 ttttatcttttgttatagaaatagcttatacataagcacttatacaataagtgctta 31461595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 34429749 - 34429809
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||| |||||||| ||| ||||| |||| | ||||||||||||| || |||||||||||    
T  34429749 aaacaacttatagtttataagaaaacagttagactttattttatctcttattatagaaata 34429809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 15360903 - 15360845
Alignment:
Q  3 acaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||| |||||| | ||||||||| |||||| ||||||||||||||||||||||||||||    
T  15360903 acaacttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaata 15360845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 44936656 - 44936709
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||| | ||||||||| |||||| |||||| |||||||||||||||||||||    
T  44936656 ttatagcttatatgaaaatagtttgactttatcttatcttttgttatagaaata 44936709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29007775 - 29007835
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||| |||||| | ||||||||| |||||| ||||| ||| ||||||||||||||||||    
T  29007775 aaacaacttatagcttatatgaaaatagtttgactttaatttttcttttgttatagaaata 29007835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 39777657 - 39777605
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatagtctataca 70  Q
    |||||||  |||||| ||||||| |||||||||||||||||||||| ||||||    
T  39777657 tatgaaagcagtttgactttattctatcttttgttatagaaatagtatataca 39777605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 42351982 - 42352026
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||||| |||||| |||||||||| ||||||||||||||||||    
T  42351982 tatgaaaatagtttgactttattttaacttttgttatagaaatag 42352026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 48830135 - 48830195
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||| ||||||| | ||||||||| |||||| ||||||||||||||| || |||||||||    
T  48830135 aaacagtttatagcttatatgaaaatagtttgactttattttatctttggtaatagaaata 48830195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 14737781 - 14737824
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||||| | |||| ||||||||||||||||||||||||||||    
T  14737781 tatgaaaacaatttgactttattttatcttttgttatagaaata 14737824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 17631178 - 17631221
Alignment:
Q  19 atgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    ||||||| |||| | |||||||||||||||||||||||||||||    
T  17631178 atgaaaacagttagactttattttatcttttgttatagaaatag 17631221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 45999354 - 45999417
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| | ||||||||  |||||| |||||| ||||||||||||||||||||||  |||||||    
T  45999354 ttatagcttatatgaaagcagtttgactttatcttatcttttgttatagaaatagcttatacat 45999417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 17420214 - 17420144
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||| ||||||| | |||||||||  ||| | |||||||||||||||| ||||| ||||||| |||||||    
T  17420214 aaacagtttatagcttatatgaaaattgttcgactttattttatcttttcttataaaaatagtttatacat 17420144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 23895331 - 23895277
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| || ||||||  ||||||||||||||||||||||||||||  |||||||    
T  23895331 atatgagaacagtttgaatttattttatcttttgttatagaaatagcttatacat 23895277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 27738239 - 27738297
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaa 59  Q
    |||||| |||||| | ||||||||| | |||| ||||||||||||||||||| ||||||    
T  27738239 aaacaaattatagcttatatgaaaacaatttgactttattttatcttttgttgtagaaa 27738297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 29266207 - 29266153
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||||||||||| | | |||||||||||||||| | ||||||| |||||||    
T  29266207 atatgaaaagagtttgacgtcattttatcttttgttacataaatagtttatacat 29266153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 30815710 - 30815752
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaa 59  Q
    ||||||||| |||||  ||||||||||||||||||||||||||    
T  30815710 atatgaaaatagtttaactttattttatcttttgttatagaaa 30815752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 33527213 - 33527267
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||| | ||||||||| |||||| || |||||||||||||||| |||||||||    
T  33527213 ttatagattatatgaaaacagtttgactgtattttatcttttgttttagaaatag 33527267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 36151564 - 36151634
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||||||  | ||| ||||| | |||| ||||||||||||||||||||| |||||||  |||||||    
T  36151564 aaacaatttataacttatacgaaaacaatttgactttattttatcttttgttattgaaatagcttatacat 36151634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 46980188 - 46980242
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttata 55  Q
    ||||||||||||  | ||||||||| |||||| ||||||||||||||||| ||||    
T  46980188 aaacaatttataacttatatgaaaacagtttgtctttattttatcttttgatata 46980242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 49517063 - 49517021
Alignment:
Q  19 atgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||| | |||| ||||||||||||||||||||||||||||    
T  49517063 atgaaaacaatttgactttattttatcttttgttatagaaata 49517021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 3924615 - 3924574
Alignment:
Q  21 gaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    ||||| |||||||||| |||||||||| ||||||||||||||    
T  3924615 gaaaacagtttgccttgattttatcttgtgttatagaaatag 3924574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 4276714 - 4276763
Alignment:
Q  20 tgaaaagagtttgcctttattttatcttttgttatagaaatagtctatac 69  Q
    |||||| ||| || |||||| ||||||||||||||||||||||| |||||    
T  4276714 tgaaaacagtatgactttatattatcttttgttatagaaatagtttatac 4276763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 4622097 - 4622044
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||| | ||||||||||||||||  || |||| |||||||||||||||||||    
T  4622097 ttatagcttatatgaaaagagtttgaattcatttgatcttttgttatagaaata 4622044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5756745 - 5756806
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||| ||||| || ||||||||| |||||  |||||| | ||||||||||||||||||||    
T  5756745 aaacaacttataatttatatgaaaacagtttaactttatatcatcttttgttatagaaatag 5756806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 7028270 - 7028233
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  7028270 ctttattttatcttttgctatagaaatagtttatacat 7028233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 26184745 - 26184692
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||| | |||| |||||||||| ||||| ||||||||||||| |||||||    
T  26184745 tatgaaaataatttgactttattttaccttttcttatagaaatagtttatacat 26184692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 37591422 - 37591373
Alignment:
Q  22 aaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||| ||||| | ||||||||||||||| ||||||||||||| |||||||    
T  37591422 aaaacagtttccttttattttatcttttattatagaaatagtttatacat 37591373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 46252774 - 46252811
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  46252774 ctttattttatcttttgttataaaaatagcctatacat 46252811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 47877126 - 47877073
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||||| ||||||||| | ||||  |||||||||||||||||||| ||||||    
T  47877126 ttatagtttatatgaaaacaatttgattttattttatcttttgttattgaaata 47877073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 50319270 - 50319233
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||||||||||||||||||||||||  |||||||    
T  50319270 ctttattttatcttttgttatagaaatagcttatacat 50319233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4200240 - 4200180
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||| ||||| | ||||||||| |  ||| |||||||||||||||||||||| |||||    
T  4200240 aaacaatatatagcttatatgaaaacaacttgactttattttatcttttgttataaaaata 4200180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 4549844 - 4549816
Alignment:
Q  34 ctttattttatcttttgttatagaaatag 62  Q
    |||||||||||||||||||||||||||||    
T  4549844 ctttattttatcttttgttatagaaatag 4549816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 4700158 - 4700186
Alignment:
Q  34 ctttattttatcttttgttatagaaatag 62  Q
    |||||||||||||||||||||||||||||    
T  4700158 ctttattttatcttttgttatagaaatag 4700186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 23373366 - 23373410
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||||| || ||| ||||||||||||||||| |||||||||||    
T  23373366 tatgaaaacagattgactttattttatcttttgatatagaaatag 23373410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 36641858 - 36641826
Alignment:
Q  29 tttgcctttattttatcttttgttatagaaata 61  Q
    |||| ||||||||||||||||||||||||||||    
T  36641858 tttgactttattttatcttttgttatagaaata 36641826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 43372024 - 43372088
Alignment:
Q  7 tttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||| | || |||||| | |||| || |||||||||| ||||||||||||||| ||||||||    
T  43372024 tttatagcttatgtgaaaataatttgactctattttatctattgttatagaaatagcctatacat 43372088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 44032064 - 44032116
Alignment:
Q  7 tttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaa 59  Q
    ||||||| | ||||||||| | |||| |||||||||| |||||||||||||||    
T  44032064 tttatagcttatatgaaaacaatttgactttattttagcttttgttatagaaa 44032116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 49586991 - 49587036
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||    
T  49586991 atatgaaaacagtttgactttattttatcttttgttatagaaatag 49587036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 26990729 - 26990685
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||    
T  26990729 atatgaaaagaatttgactttattttatcttttgttatagaaata 26990685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 1395666 - 1395612
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||| | |||| |||||||||||||||||||||||||||||  |||||||    
T  1395666 atatgaaaataatttgactttattttatcttttgttatagaaatagcttatacat 1395612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 38462276 - 38462202
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataagtg 91  Q
    ||||||||| |||||| ||||||||||||||||| |||||||||||  |||| || |||||| || | |||||||    
T  38462276 atatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtg 38462202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 40122828 - 40122881
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||| |||||| ||||||||||||||||||||| |||||||  |||||||    
T  40122828 tatgaaaacagtttgactttattttatcttttgttattgaaatagcttatacat 40122881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 53736188 - 53736232
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||    
T  53736188 atatgaaaatagtttgacattattttatcttttgttatagaaata 53736232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 15304412 - 15304467
Alignment:
Q  7 tttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||| |||| ||||||||| | |||  |||||||||||||||||||||||||||||    
T  15304412 tttagagtttatatgaaaacaatttaactttattttatcttttgttatagaaatag 15304467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 20192672 - 20192735
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| | |||||||||  ||||| |||||||||||||||||||||| ||||||  |||||||    
T  20192672 ttatagattatatgaaaactgtttgactttattttatcttttgttatataaatagcttatacat 20192735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 22232821 - 22232767
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||| |||||| |||||||||||| ||||||||| ||||||  |||||||    
T  22232821 atatgaaaacagtttgactttattttatcatttgttatataaatagcttatacat 22232767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 25195419 - 25195377
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaa 59  Q
    ||||||||| | |||| ||||||||||||||||||||||||||    
T  25195419 atatgaaaataatttgactttattttatcttttgttatagaaa 25195377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 32703148 - 32703074
Alignment:
Q  2 aacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaaca 76  Q
    |||||||||||| | ||||||||| | ||||  ||||||||||||||| | ||||||||||  ||||||| ||||    
T  32703148 aacaatttatagcttatatgaaaacaatttgagtttattttatcttttataatagaaatagcttatacataaaca 32703074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 34954078 - 34954032
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagt 63  Q
    ||||||||| || ||| |||||||||||||| |||||||||||||||    
T  34954078 atatgaaaacagcttgactttattttatcttgtgttatagaaatagt 34954032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 45432998 - 45433060
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatagt 63  Q
    ||||||||||||| | ||||||||| | |||  ||| |||||||||||| |||||||||||||    
T  45432998 aaacaatttatagctcatatgaaaacaatttaacttcattttatcttttcttatagaaatagt 45433060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 2128343 - 2128380
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||||||||||||||||||||||||  |||||||    
T  2128343 ctttattttatcttttgttatagaaatagcttatacat 2128380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 3758042 - 3757989
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||||||||| ||||||||||| |||||||| | ||||||  |||||||    
T  3758042 tatgaaaagagtttgactttattttatattttgttacaaaaatagcttatacat 3757989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 6241160 - 6241201
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaa 59  Q
    |||||||| |||||| |||||||||| |||||||||||||||    
T  6241160 tatgaaaatagtttgactttattttaacttttgttatagaaa 6241201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 20267140 - 20267107
Alignment:
Q  27 agtttgcctttattttatcttttgttatagaaat 60  Q
    |||||| |||||||||||||||||||||||||||    
T  20267140 agtttgactttattttatcttttgttatagaaat 20267107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 24887358 - 24887403
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    ||||||| | |||||| ||||||||||||| |||||||||||||||    
T  24887358 atatgaatacagtttgactttattttatctattgttatagaaatag 24887403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 33883006 - 33882969
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||||||||||||||||||||||| | |||||||    
T  33883006 ctttattttatcttttgttatagaaataatttatacat 33882969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 36783402 - 36783471
Alignment:
Q  10 atagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag-tctatacatcaacact 78  Q
    |||||| ||||||||| | |||  ||||||||||||||||| ||||||||||| | ||||||| ||||||    
T  36783402 atagtttatatgaaaacaattttactttattttatcttttggtatagaaatagctttatacataaacact 36783471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 44284134 - 44284187
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||| |||||| |||| |||||| |||||||||||||||||  |||||||    
T  44284134 tatgaaaacagtttgactttgttttattttttgttatagaaatagcttatacat 44284187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 54775112 - 54775079
Alignment:
Q  28 gtttgcctttattttatcttttgttatagaaata 61  Q
    ||||| ||||||||||||||||||||||||||||    
T  54775112 gtttgactttattttatcttttgttatagaaata 54775079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 905062 - 905090
Alignment:
Q  34 ctttattttatcttttgttatagaaatag 62  Q
    |||||||||||||||||||||||||||||    
T  905062 ctttattttatcttttgttatagaaatag 905090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 10101551 - 10101595
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||||| | |||  ||||||||||||||||||||||||||||    
T  10101551 atatgaaaacaatttaactttattttatcttttgttatagaaata 10101595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 10212476 - 10212520
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||||| | |||  ||||||||||||||||||||||||||||    
T  10212476 atatgaaaacaatttaactttattttatcttttgttatagaaata 10212520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24235742 - 24235802
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||| |||||| | ||||  ||| |||||| |||||| |||||||||||||||||||||    
T  24235742 aaacaacttatagcttatattcaaatagtttgactttatattatcttttgttatagaaata 24235802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 36646474 - 36646518
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    |||||||||||||||||| ||||||||||  |||| |||||||||    
T  36646474 ctttattttatcttttgtcatagaaatagcttatatatcaacact 36646518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 51278234 - 51278286
Alignment:
Q  19 atgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||| |||||| |||||||| || |||||||||||||||||  |||||||    
T  51278234 atgaaaacagtttgactttatttaatattttgttatagaaatagcttatacat 51278286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 53457371 - 53457335
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttat 54  Q
    |||||||| |||||| |||||||||||||||||||||    
T  53457371 tatgaaaatagtttgactttattttatcttttgttat 53457335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 27587 - 27527
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||| |||||||| ||||||||| | |||| |||||||||||||| |||||||||||||    
T  27587 aaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttatagaaata 27527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7714253 - 7714197
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttataga 57  Q
    |||||| |||||||||||||||||| || |  |||||||||||||||||||||||||    
T  7714253 aaacaacttatagttgatatgaaaacagctcacctttattttatcttttgttataga 7714197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 39392746 - 39392790
Alignment:
Q  27 agtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| |||||||||||||||||||||||||||||| |||||||    
T  39392746 agtttgactttattttatcttttgttatagaaatagtttatacat 39392790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 14482185 - 14482143
Alignment:
Q  29 tttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||| |||||||||||||||||||||||||||||| |||||||    
T  14482185 tttgactttattttatcttttgttatagaaatagtttatacat 14482143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 27728096 - 27728150
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||| || |||||    
T  27728096 atatgaaaatagtttgactttattttatctttttttatagaaatagcctgtacat 27728150  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39866795 - 39866857
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagttt-gcctttattttatcttttgttatagaaatag 62  Q
    |||||||||||||||  |||||||| ||||| | |||||||||||||||||||||||| ||||    
T  39866795 aaacaatttatagtttttatgaaaacagttttgactttattttatcttttgttatagagatag 39866857  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 14949882 - 14949829
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||||||||||||| || |||||||||||||||||||||| |||  |||||||    
T  14949882 tatgaaaagagtttgactctattttatcttttgttatagaagtagcttatacat 14949829  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 26820203 - 26820150
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||||| |||  |||| |||||| ||||||||||||||||||||||||||||    
T  26820203 ttatagtttataacaaaatagtttgactttattttatcttttgttatagaaata 26820150  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 40728498 - 40728537
Alignment:
Q  22 aaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  40728498 aaaacagtttgactttattttatcttttgttatagaaata 40728537  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 8799390 - 8799356
Alignment:
Q  27 agtttgcctttattttatcttttgttatagaaata 61  Q
    |||||| ||||||||||||||||||||||||||||    
T  8799390 agtttgactttattttatcttttgttatagaaata 8799356  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 10437875 - 10437837
Alignment:
Q  22 aaaagagtttgcctttattttatcttttgttatagaaat 60  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  10437875 aaaacagtttgactttattttatcttttgttatagaaat 10437837  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 11119084 - 11119118
Alignment:
Q  27 agtttgcctttattttatcttttgttatagaaata 61  Q
    |||||| ||||||||||||||||||||||||||||    
T  11119084 agtttgactttattttatcttttgttatagaaata 11119118  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 26215487 - 26215437
Alignment:
Q  21 gaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||| |||||  |||||||||||||||||||||||||||||  |||||||    
T  26215487 gaaaatagtttaactttattttatcttttgttatagaaatagcttatacat 26215437  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 33209286 - 33209340
Alignment:
Q  8 ttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    |||||||| ||||||||| |||| | |||||||||||||||  ||||||||||||    
T  33209286 ttatagtttatatgaaaacagttcgactttattttatctttcattatagaaatag 33209340  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 4558793 - 4558732
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    ||||||||| | |||  |||||||||||||||| ||||||||||||  ||||||| ||||||    
T  4558793 atatgaaaataatttaactttattttatcttttattatagaaatagcttatacataaacact 4558732  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 10939386 - 10939325
Alignment:
Q  33 cctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataagtgctt 94  Q
    ||||||||||||||||||| |||||||||   ||||||| |||| || | ||||||||||||    
T  10939386 cctttattttatcttttgtaatagaaataacttatacataaacagtagtataataagtgctt 10939325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 11569546 - 11569595
Alignment:
Q  29 tttgcctttattttatcttttgttatagaaatagtctatacatcaacact 78  Q
    |||| |||||||||||||||||||||| |||||| |||| ||||| ||||    
T  11569546 tttgtctttattttatcttttgttataaaaatagactatgcatcagcact 11569595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 25867081 - 25867036
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatag 62  Q
    ||||||||| | |||| |||||||| ||||||||||||||||||||    
T  25867081 atatgaaaatattttgactttatttcatcttttgttatagaaatag 25867036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 32976395 - 32976358
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||||||||||||||||||||||||  |||||||    
T  32976395 ctttattttatcttttgttatagaaatagcgtatacat 32976358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 42597379 - 42597342
Alignment:
Q  34 ctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||||||||||||||||||||||||||  |||||||    
T  42597379 ctttattttatcttttgttatagaaatagcttatacat 42597342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 9956904 - 9956932
Alignment:
Q  34 ctttattttatcttttgttatagaaatag 62  Q
    |||||||||||||||||||||||||||||    
T  9956904 ctttattttatcttttgttatagaaatag 9956932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 11494155 - 11494111
Alignment:
Q  10 atagttgatatgaaaagagtttgcctttattttatcttttgttat 54  Q
    |||||| ||||||||| |||||| |||||| ||||||||||||||    
T  11494155 atagtttatatgaaaaaagtttgactttatgttatcttttgttat 11494111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 12224974 - 12225018
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||||| |||||| ||||||||||||||||||  ||||||||    
T  12224974 atatgaaaatagtttgactttattttatcttttgtcttagaaata 12225018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 29699237 - 29699205
Alignment:
Q  29 tttgcctttattttatcttttgttatagaaata 61  Q
    |||| ||||||||||||||||||||||||||||    
T  29699237 tttgactttattttatcttttgttatagaaata 29699205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 38561737 - 38561677
Alignment:
Q  1 aaacaatttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    |||||| |||||||  | || |||| |||||| |||||||||||||||||||||| |||||    
T  38561737 aaacaacttatagtatagataaaaatagtttgactttattttatcttttgttatataaata 38561677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 43812454 - 43812494
Alignment:
Q  38 attttatcttttgttatagaaatagtctatacatcaacact 78  Q
    ||||||||||||||||||||||||  |||||||| ||||||    
T  43812454 attttatcttttgttatagaaataaactatacataaacact 43812494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 1149 - 1203
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| || |||||| |||||||||||||||||||||||||||||  |||||||    
T  1149 atatgagaatagtttgactttattttatcttttgttatagaaatagcttatacat 1203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 2826 - 2772
Alignment:
Q  17 atatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    |||||| || |||||| |||||||||||||||||||||||||||||  |||||||    
T  2826 atatgagaatagtttgactttattttatcttttgttatagaaatagcttatacat 2772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 20163 - 20120
Alignment:
Q  28 gtttgcctttattttatcttttgttatagaaatagtctatacat 71  Q
    ||||| ||||||||||||||| |||||||||||||| |||||||    
T  20163 gtttgactttattttatctttggttatagaaatagtatatacat 20120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 6713 - 6815
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataagtgctta-attaacctttttattcaaaca 116  Q
    |||||||| | |||| ||| | ||||| |||||||||||||||||| ||||||| | |||| || | ||||||||||| |||||  | ||||| ||||||    
T  6713 tatgaaaacaatttgacttaagtttattttttgttatagaaatagtttatacataagcacttatatgataagtgcttatattaagttgtttatccaaaca 6812  T
Q  117 aat 119  Q
    |||    
T  6813 aat 6815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 51573 - 51519
Alignment:
Q  7 tttatagttgatatgaaaagagtttgcctttattttatcttttgttatagaaata 61  Q
    ||||||||||||||||||| | |||  ||||||||||| |||||||||| |||||    
T  51573 tttatagttgatatgaaaacaatttaactttattttatattttgttataaaaata 51519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 34060 - 34110
Alignment:
Q  5 aatttatagttgatatgaaaagagtttgcctttattttatcttttgttata 55  Q
    ||||||||||| ||||||||| | |||| |||||||||||||||| |||||    
T  34060 aatttatagttcatatgaaaataatttgactttattttatcttttattata 34110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 116632 - 116734
Alignment:
Q  18 tatgaaaagagtttgcctttattttatcttttgttatagaaatagtctatacatcaacactaatctaataagtgctta-attaacctttttattcaaaca 116  Q
    |||||||| | |||| ||| | ||||| |||||||||||||||||| ||||||| | |||| || | ||||||||||| |||||  | ||||| ||||||    
T  116632 tatgaaaacaatttgacttaagtttattttttgttatagaaatagtttatacataagcacttatatgataagtgcttatattaagttgtttatccaaaca 116731  T
Q  117 aat 119  Q
    |||    
T  116732 aat 116734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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