View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6592_high_1 (Length: 630)

Name: NF6592_high_1
Description: NF6592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6592_high_1
NF6592_high_1
[»] chr8 (9 HSPs)
chr8 (18-577)||(41566094-41566653)
chr8 (23-410)||(1029481-1029867)
chr8 (76-311)||(11954448-11954675)
chr8 (305-490)||(18003728-18003913)
chr8 (305-499)||(10658961-10659157)
chr8 (70-155)||(10659195-10659280)
chr8 (405-499)||(957274-957368)
chr8 (405-499)||(5949901-5949995)
chr8 (141-246)||(38731824-38731929)
[»] chr4 (29 HSPs)
chr4 (25-510)||(2814736-2815218)
chr4 (77-560)||(38011253-38011738)
chr4 (101-452)||(18402592-18402937)
chr4 (59-383)||(35260018-35260333)
chr4 (69-487)||(20649959-20650372)
chr4 (271-380)||(44311619-44311727)
chr4 (92-155)||(1745422-1745485)
chr4 (404-451)||(44274348-44274395)
chr4 (400-490)||(21081744-21081834)
chr4 (313-462)||(44206803-44206952)
chr4 (314-427)||(32338357-32338470)
chr4 (402-510)||(38838465-38838573)
chr4 (400-455)||(23096409-23096464)
chr4 (273-356)||(27433332-27433415)
chr4 (92-155)||(41839740-41839803)
chr4 (391-450)||(2406393-2406454)
chr4 (279-452)||(41421273-41421447)
chr4 (305-375)||(41839632-41839702)
chr4 (405-462)||(25100570-25100627)
chr4 (270-319)||(29459963-29460012)
chr4 (70-155)||(44136775-44136860)
chr4 (101-153)||(21081557-21081609)
chr4 (270-358)||(29847730-29847817)
chr4 (400-450)||(7784902-7784952)
chr4 (402-452)||(29847636-29847686)
chr4 (198-239)||(44311756-44311797)
chr4 (405-490)||(53813689-53813774)
chr4 (405-489)||(21121837-21121920)
chr4 (405-457)||(41839548-41839600)
[»] chr6 (17 HSPs)
chr6 (184-578)||(31946260-31946657)
chr6 (90-344)||(3008661-3008906)
chr6 (306-573)||(592598-592864)
chr6 (170-358)||(15563566-15563751)
chr6 (69-358)||(6189615-6189900)
chr6 (77-155)||(8209982-8210060)
chr6 (400-460)||(1717512-1717572)
chr6 (305-452)||(6257419-6257567)
chr6 (405-445)||(17458898-17458938)
chr6 (112-155)||(3709550-3709593)
chr6 (264-358)||(30625582-30625675)
chr6 (113-164)||(6257236-6257287)
chr6 (104-151)||(29032697-29032744)
chr6 (111-149)||(17459193-17459231)
chr6 (405-462)||(6189950-6190007)
chr6 (270-355)||(32718098-32718182)
chr6 (75-151)||(31303999-31304075)
[»] chr1 (27 HSPs)
chr1 (23-521)||(48563172-48563670)
chr1 (24-311)||(52148735-52149027)
chr1 (403-506)||(14167631-14167734)
chr1 (274-499)||(18628735-18628959)
chr1 (405-530)||(18650178-18650304)
chr1 (273-490)||(11871482-11871698)
chr1 (272-373)||(26759427-26759526)
chr1 (69-153)||(18650445-18650529)
chr1 (92-155)||(18628967-18629030)
chr1 (122-356)||(14167771-14168007)
chr1 (315-380)||(26925005-26925070)
chr1 (305-453)||(15309133-15309279)
chr1 (271-358)||(2688246-2688330)
chr1 (305-380)||(33323984-33324059)
chr1 (75-145)||(19757726-19757796)
chr1 (274-360)||(25023299-25023385)
chr1 (101-155)||(50959523-50959577)
chr1 (286-358)||(23777109-23777178)
chr1 (405-490)||(26762452-26762537)
chr1 (405-490)||(50959301-50959385)
chr1 (110-153)||(2688447-2688490)
chr1 (77-152)||(16256445-16256520)
chr1 (405-452)||(19757947-19757994)
chr1 (305-352)||(42241478-42241525)
chr1 (405-451)||(3249210-3249256)
chr1 (79-159)||(25023482-25023562)
chr1 (272-356)||(25077767-25077851)
[»] chr7 (14 HSPs)
chr7 (38-578)||(28002574-28003113)
chr7 (15-415)||(16994388-16994783)
chr7 (69-358)||(10623314-10623597)
chr7 (69-547)||(27899948-27900425)
chr7 (406-506)||(24957410-24957510)
chr7 (271-499)||(20118028-20118254)
chr7 (420-490)||(31727453-31727523)
chr7 (272-356)||(11669163-11669247)
chr7 (405-452)||(5907201-5907248)
chr7 (110-165)||(10019739-10019794)
chr7 (405-444)||(14737196-14737235)
chr7 (169-248)||(24957664-24957743)
chr7 (400-462)||(11669074-11669136)
chr7 (94-134)||(5907002-5907041)
[»] chr5 (5 HSPs)
chr5 (299-578)||(2770673-2770947)
chr5 (86-358)||(43168550-43168819)
chr5 (173-506)||(19932179-19932514)
chr5 (405-512)||(29724885-29724992)
chr5 (308-380)||(12466240-12466312)
[»] chr3 (16 HSPs)
chr3 (23-577)||(35739758-35740315)
chr3 (310-510)||(28421307-28421508)
chr3 (271-358)||(44558474-44558561)
chr3 (26-164)||(7903391-7903530)
chr3 (407-460)||(48822625-48822678)
chr3 (400-452)||(9192227-9192279)
chr3 (404-451)||(3369400-3369447)
chr3 (272-358)||(17765996-17766080)
chr3 (272-358)||(19067316-19067400)
chr3 (305-499)||(47005607-47005801)
chr3 (272-356)||(557578-557662)
chr3 (402-462)||(5450246-5450306)
chr3 (400-452)||(20708999-20709051)
chr3 (270-357)||(43335267-43335354)
chr3 (101-155)||(47005839-47005893)
chr3 (87-164)||(3153897-3153974)
[»] chr2 (20 HSPs)
chr2 (69-347)||(39228862-39229139)
chr2 (101-330)||(12419362-12419591)
chr2 (101-330)||(12431422-12431651)
chr2 (110-423)||(4724348-4724660)
chr2 (76-424)||(14694837-14695186)
chr2 (110-358)||(4730704-4730948)
chr2 (271-380)||(18481892-18481999)
chr2 (405-462)||(38002210-38002267)
chr2 (406-490)||(8216548-8216632)
chr2 (115-239)||(5136197-5136318)
chr2 (405-490)||(19182355-19182440)
chr2 (405-453)||(15544645-15544693)
chr2 (286-358)||(39711496-39711568)
chr2 (409-488)||(464002-464081)
chr2 (104-155)||(9848108-9848159)
chr2 (405-452)||(35658371-35658418)
chr2 (395-462)||(39711394-39711460)
chr2 (169-223)||(35243181-35243235)
chr2 (111-152)||(38002026-38002067)
chr2 (300-360)||(9848191-9848251)
[»] scaffold0174 (1 HSPs)
scaffold0174 (110-358)||(30584-30828)
[»] scaffold0003 (2 HSPs)
scaffold0003 (70-155)||(353236-353321)
scaffold0003 (270-451)||(353052-353233)
[»] scaffold0178 (1 HSPs)
scaffold0178 (405-462)||(9315-9372)
[»] scaffold0445 (1 HSPs)
scaffold0445 (270-358)||(10393-10481)
[»] scaffold0042 (1 HSPs)
scaffold0042 (400-460)||(31261-31321)


Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 577
Target Start/End: Original strand, 41566094 - 41566653
Alignment:
Q  18 agatggggtggtcgaagacttttggccttttttgacgtcgttttgttttataaacctgaaagggtatggttctgttaacctggaagggtctagttactaa 117  Q
    |||||||||||||||||||||||||||| |||||| || ||||  ||||||||||| |||||||||||||||||||||||   |||||||| ||||||||    
T  41566094 agatggggtggtcgaagacttttggcctattttgatgtggtttgcttttataaacccgaaagggtatggttctgttaacccataagggtctggttactaa 41566193  T
Q  118 cgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgactgctttaactctctgatgtttccaggtct 217  Q
    |||||| |||||||||||  ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||| |||||||    
T  41566194 cgtattagactcatcccacgatctgagttcttacgcgtatgtttgaattccattgtgtttggttgcttgactgctttgactctctgatgttttcaggtct 41566293  T
Q  218 gttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttg 317  Q
    |||||||||||||| ||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||| |||||    
T  41566294 gttgaggtctgcaggtttcaagtcgtcttgtattcctacactctggtatttaatgctcgaaagagctgttatgcttgttgtcttgtgcagggagctgttg 41566393  T
Q  318 gcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaacttctcatattttttgtaactt 417  Q
     || || ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||  | | |||||||||||||||||||||||||||    
T  41566394 ccacttagattttgataccgtgttggcggtcgatccatttgtcgtttttaaactctaactgttattggcaaaagttaacttctcatattttttgtaactt 41566493  T
Q  418 ggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagtggattcactaggtctgttttcatcgat 517  Q
    ||||||||| || |||||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||| || |||||||||||||||||||    
T  41566494 ggtttcgcg-ccgtacgcgggttcgctggattgcgtccgtgattagttaaactttgttatgatagataagagtggatgcattaggtctgttttcatcgat 41566592  T
Q  518 gtatttccttttgggttgttcctgggttagattttatg-tccccggtctttgtatctctct 577  Q
    ||||  ||||||||||||| ||||||| || ||||||| |  |||||||||||||||||||    
T  41566593 gtatccccttttgggttgtacctgggtcaggttttatgttgaccggtctttgtatctctct 41566653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 23 - 410
Target Start/End: Complemental strand, 1029867 - 1029481
Alignment:
Q  23 gggtggtcgaagacttttggccttttttgacgtcgttttgttttataaacctgaaagggtatggttctgttaacctggaagggtctagttactaacgtat 122  Q
    ||||||| |||||||||| |||| |||||| || |||||||| |||||||| | |||||| ||||||| |||||| | |||||||| |||||||||||||    
T  1029867 gggtggttgaagacttttagcctattttgaagtggttttgttctataaacccggaagggtctggttctattaacccgaaagggtct-gttactaacgtat 1029769  T
Q  123 tggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctgttga 222  Q
    |||||||||||||  ||||||||||||||||||||||||||||  |||||||||||| |||||||||||||  |||||||||||||| || |||||||||    
T  1029768 tggactcatcccacgatctgagttcttacgcgtatgtttgaatcccgttgtgtttggctgcttgactgcttcgactctctgatgttttcatgtctgttga 1029669  T
Q  223 ggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagt 322  Q
    |  |||||  ||||||||||| |||||| |||||||| || ||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| |    
T  1029668 gacctgcatgtttcaagtcgttttgtatgtctacactctggtatttgatgctcgaaagagctattatgcttactgttttgtgcagggagttgttggcact 1029569  T
Q  323 tggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaacttctcatatttttt 410  Q
    || ||||||||||  |||||||||| |||||||||| |||||||||||||||| ||||||||  | ||||| ||||||||||||||||    
T  1029568 tgaattttgataccatgttggcggtcgatccattcgacgtttttaaactctaagtgttattggcaaaggtttacttctcatatttttt 1029481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 76 - 311
Target Start/End: Complemental strand, 11954675 - 11954448
Alignment:
Q  76 aaagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgt 175  Q
    ||||||| || ||| ||||||| | |||||||| |||| ||||||||||||||||||||   |||||||||||||||||| |||||||||| ||||||||    
T  11954675 aaagggtgtgattccgttaacccgaaagggtctggttattaacgtattggactcatccctggatctgagttcttacgcgtctgtttgaattccgttgtgt 11954576  T
Q  176 ttggttgcttgactgctttaactctctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctc 275  Q
    |||||  | |||||||||        ||||||||  |||| ||||||  ||||||| ||||||||| || ||| |  ||||||| || ||| ||||||||    
T  11954575 ttggtgacatgactgctt--------tgatgtttttaggtatgttgaaatctgcaggtttcaagtcttcgtgtctgcctacactttggtatatgatgctc 11954484  T
Q  276 gaaagagctgttatgcttgctgtcttgtgcagggag 311  Q
    ||||||||| ||||||||||||  |||| |||||||    
T  11954483 gaaagagcttttatgcttgctgctttgttcagggag 11954448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 305 - 490
Target Start/End: Original strand, 18003728 - 18003913
Alignment:
Q  305 cagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaacttctcata 404  Q
    ||||||| |||||||| |||||||||| ||| ||||||||||| ||| |||| ||| |   |||||||||| |||| |    | | ||| |||| |||||    
T  18003728 cagggagctgttggcacttggattttgttaccgtgttggcggtcgattcatttgtcatacctaaactctaattgttctatgcagacgttcacttttcata 18003827  T
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagt 490  Q
    |||||||||||||||||||||||   |||||| ||||||||||||||| |  ||||||   ||  ||||||| |||||||||||||    
T  18003828 ttttttgtaacttggtttcgcgcatgtacgcgggttcgctgggttgcgcctttgattagggaatttttgttaggatagattagagt 18003913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 305 - 499
Target Start/End: Complemental strand, 10659157 - 10658961
Alignment:
Q  305 cagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaacttctcat- 403  Q
    |||||||||||||||| |||||||||| ||| ||||||| ||| |||||||||  | |||||| ||||||| |||| |||  | | ||| |||| ||||     
T  10659157 cagggagttgttggcacttggattttgttaccgtgttggtggtcgatccattcaccatttttatactctaattgttcttgtga-atgtttacttttcatt 10659059  T
Q  404 -attttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaa-actttgttatgatagattagagtggattcact 499  Q
      ||||||||||| ||||||||  ||| |||||| |||||||| |||| |||  |||||| | ||   ||||||| ||||||||||||| ||| ||||    
T  10659058 ctttttttgtaacctggtttcgaacccgtacgcgggttcgctgagttgggtctatgattagtgaattttttgttaggatagattagagttgatccact 10658961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 10659280 - 10659195
Alignment:
Q  70 aacctgaaagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgt 155  Q
    |||| |||||| | ||||||  |||||||| ||| |||| ||| || ||||||||||||||||||   ||||||||||||||||||    
T  10659280 aacccgaaaggatctggttcgtttaacctgaaagagtctggttgctgacgtattggactcatccctcgatctgagttcttacgcgt 10659195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 499
Target Start/End: Complemental strand, 957368 - 957274
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagtggattcact 499  Q
    ||||||||||| ||||||||| |   |||| | ||||| |||||||||||  |||||| | ||  ||||||| ||||||||||||| ||||||||    
T  957368 ttttttgtaacctggtttcgcacatgtacgtgggttcgttgggttgcgtctttgattagtgaatttttgttaggatagattagagttgattcact 957274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 499
Target Start/End: Complemental strand, 5949995 - 5949901
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagtggattcact 499  Q
    ||||||||||   ||||| |||||| |||||| ||||||| ||||||||| ||||||| |  |  ||||||| ||||||||||||| | ||||||    
T  5949995 ttttttgtaatccggttttgcgcccgtacgcgggttcgcttggttgcgtcagtgattagtgtatttttgttaggatagattagagttgtttcact 5949901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 38731824 - 38731929
Alignment:
Q  141 tgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctgttgaggtctgcagatttcaagt 240  Q
    ||||||||||||||| ||||||||     ||||||||||| || ||||| |||  ||||| |||||||| ||  ||||||||| | || || ||||||||    
T  38731824 tgagttcttacgcgtttgtttgaaaccaattgtgtttggtggcatgacttcttcgactctttgatgttttcaaatctgttgagatttgtaggtttcaagt 38731923  T
Q  241 cgtctt 246  Q
    ||||||    
T  38731924 cgtctt 38731929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 25 - 510
Target Start/End: Complemental strand, 2815218 - 2814736
Alignment:
Q  25 gtggtcgaagacttttggccttttttgacgtcgttttgttttataaacctgaaagggtatggttctgttaacctggaagggtctagttactaacgtattg 124  Q
    ||||||||||||||||||||| |||||| || |||| |||||||||||| || ||||||||||| |||||||  |||||||||| |||||||| ||||||    
T  2815218 gtggtcgaagacttttggcctattttgatgtggtttggttttataaacccgagagggtatggttatgttaactcggaagggtctggttactaatgtattg 2815119  T
Q  125 gactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctgttgagg 224  Q
    ||||||||| |  || |||||||||||||||||||||||||| |||||| ||||||||||| |||||||  ||||||||||||||  |||||||||||||    
T  2815118 gactcatcctacgatatgagttcttacgcgtatgtttgaattccgttgtctttggttgcttaactgcttcgactctctgatgttttaaggtctgttgagg 2815019  T
Q  225 tctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttg 324  Q
    ||||||| ||||||||||||||||||| |||||||  | ||||| ||||| ||||||||||||||| ||| ||||||||||||||||||||||||| |||    
T  2815018 tctgcaggtttcaagtcgtcttgtattcctacact--ggtattt-atgctagaaagagctgttatgtttgatgtcttgtgcagggagttgttggcacttg 2814922  T
Q  325 gattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaacttctcatattttttgtaacttggtttcg 424  Q
    ||||||||||| ||||||||  | ||||||||||||||||||||| ||||||||||||||  | ||||||| |||||||||| ||||||| |||||||||    
T  2814921 gattttgataccgtgttggcaatcgatccattcgtcgtttttaaattctaactgttattggcaaaggttaaattctcatattgtttgtaaattggtttcg 2814822  T
Q  425 cgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagtggattcactaggtctgtttt 510  Q
    ||||| |||||  ||||  ||| ||||||||||||||| || |||||||||||||||||||||||||||| || ||||||||||||    
T  2814821 cgcccgtacgcaggttcagtggattgcgtccgtgattagttgaactttgttatgatagattagagtggatccattaggtctgtttt 2814736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 77 - 560
Target Start/End: Complemental strand, 38011738 - 38011253
Alignment:
Q  77 aagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtt 176  Q
    ||||||||||||||| ||||| | |||||||| |||||||||||||||||||||||||   |||||| |||||||| ||| |||||||  | ||||||||    
T  38011738 aagggtatggttctgataacccgcaagggtctggttactaacgtattggactcatccctcgatctgaattcttacgtgtaggtttgaagctggttgtgtt 38011639  T
Q  177 tggttgcttgactgctttaactctctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcg 276  Q
    ||||  | ||| |||||  |||||||||||||||||||||||||||| ||||||| |||||||| |||| ||    ||||||| || |||||| ||||||    
T  38011638 tggtgacctgattgcttagactctctgatgtttccaggtctgttgagatctgcaggtttcaagttgtctcgttcgcctacactctggtatttggtgctcg 38011539  T
Q  277 aaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaac 376  Q
    |||||||| ||||||||||||  | || ||||||| |||||||| |||||||||| ||| |||||| |||| |||||||||| | |||||||||  |||     
T  38011538 aaagagcttttatgcttgctgcttagttcagggagctgttggcacttggattttgttaccgtgttgacggtcgatccattcgccttttttaaaccttaat 38011439  T
Q  377 tgttattgaaataggttaacttctcata-ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgtt 475  Q
    | ||||||| | || || |||||||||| ||||||||||||||||||| ||||| || ||| |||| |||||||||| | ||| ||| |  |  ||||||    
T  38011438 tattattgacagagatttacttctcatatttttttgtaacttggtttcacgcccgtaggcgggttctctgggttgcgcctgtggttagtagatttttgtt 38011339  T
Q  476 atgatagattagagtggattcactaggtctgtttt-catcgatgtatttccttttgggttgttcctgggttagattttatgtcccc 560  Q
    | |||| ||||  || ||| |||||||||||||||  ||||||||||| ||||||||||||| ||||||| || ||| ||||||||    
T  38011338 acgatatattaaggttgatccactaggtctgttttatatcgatgtattcccttttgggttgtacctgggtcaggtttcatgtcccc 38011253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 101 - 452
Target Start/End: Complemental strand, 18402937 - 18402592
Alignment:
Q  101 aagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgactgctttaactct 200  Q
    |||||||| ||||||||||||||| ||||||||    ||||||||||||||    |||||||  ||   |||||||||||  | ||||| ||||  ||||    
T  18402937 aagggtctggttactaacgtattgaactcatccatcgatctgagttcttac----atgtttgttttgaattgtgtttggtgacatgacttctttgtctct 18402842  T
Q  201 ctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcgaaagagctgttatgcttgctgtct 300  Q
    ||||||||||||| | ||||||| ||||||||||||||||||||||||  | ||||||  ||||| || || |||||||||||| ||||||||||||  |    
T  18402841 ctgatgtttccagatttgttgagatctgcagatttcaagtcgtcttgt-ctgctacacattgatactttatactcgaaagagct-ttatgcttgctgctt 18402744  T
Q  301 tgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaacttct 400  Q
    ||| ||||||||||||| || | ||| ||||||| |||||||||||| |||||||||||||   ||||||  ||| |||| ||   ||| ||| |||| |    
T  18402743 tgttcagggagttgttgtcactaggagtttgatattgtgttggcggtcgatccattcgtcgaaattaaaccttaattgttcttttcatatgttcacttgt 18402644  T
Q  401 catattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcg 452  Q
    ||||||| |||||| | |||||||| ||| |||||| ||||| |||||||||    
T  18402643 catatttcttgtaattaggtttcgcacccgtacgcgggttcgttgggttgcg 18402592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 59 - 383
Target Start/End: Complemental strand, 35260333 - 35260018
Alignment:
Q  59 tttgttttataaacctgaaagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgtatg 158  Q
    |||| ||| |||||||||| ||||||||||||||||||||| |||||| |   ||||||| ||||||| ||||||    || |||||||||| |||||||    
T  35260333 tttggtttctaaacctgaaggggtatggttctgttaacctgaaagggtttgaatactaacatattggattcatccatcgatttgagttcttatgcgtatg 35260234  T
Q  159 tttgaatttcgttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacac 258  Q
    |||||||   |||||||||| | ||  |||||||| || | |   |||||| ||||||||||||| ||| ||| |||| |||| |||||| |  ||||||    
T  35260233 tttgaatcatgttgtgtttgatggcccgactgcttcaattgt---atgttttcaggtctgttgagatctccaggtttctagtcatcttgtctgcctacac 35260137  T
Q  259 tatgatatttgatgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcg 358  Q
    | || ||||||||||||||||||||| ||||||||||||  |||| |||| || |||||||| ||| |||||      |||||||||||  || ||||||    
T  35260136 tttg-tatttgatgctcgaaagagcttttatgcttgctgctttgttcaggcagctgttggcacttgaatttt-----cgtgttggcggtcaattcattcg 35260043  T
Q  359 tcgtttttaaactctaactgttatt 383  Q
     |||||||||||  | |||||||||    
T  35260042 acgtttttaaaccatgactgttatt 35260018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 69 - 487
Target Start/End: Original strand, 20649959 - 20650372
Alignment:
Q  69 aaacctgaaagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttc 168  Q
    ||||| ||||||||||||||    ||||||| |||||| | |||| |||||||||| |||||||||  ||||||||||||||||| | ||||||||  |     
T  20649959 aaacccgaaagggtatggttaa--taacctgaaagggtttggttattaacgtattgaactcatccctcaatctgagttcttacgcatctgtttgaaactt 20650056  T
Q  169 gttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatattt 268  Q
    || |||||||||    |  || |||  ||||||||||||| |  ||||||||||| ||||||| ||||||| | || ||| || | ||||| || || |     
T  20650057 gtggtgtttggtgatgttgcttcttcgactctctgatgtt-ctgggtctgttgagatctgcaggtttcaagccatcatgt-ttgccacactctggtacta 20650154  T
Q  269 gatgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaa 368  Q
     ||||||||||||||| ||| ||||||||  |||  ||||||| |||||||| |||||||||| ||| |||||||| || ||||| |||| |  ||| ||    
T  20650155 tatgctcgaaagagctcttacgcttgctgctttgctcagggagctgttggcacttggattttgttaccgtgttggcagtcgatccgttcgccagtttgaa 20650254  T
Q  369 actctaactgttattgaaataggttaacttctcatattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaa 468  Q
     ||  |||| || ||| | | | || |||  |||||||||||||||||||||||||||||  |||||  |||||||| |||||| ||||||||| | ||     
T  20650255 gcttgaactattcttgcattcg-ttcactattcatattttttgtaacttggtttcgcgcctgtacgcaggttcgctgagttgcgcccgtgattagtgaat 20650353  T
Q  469 ctttgttatgatagattag 487  Q
     ||||||| ||||||||||    
T  20650354 ttttgttaggatagattag 20650372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 271 - 380
Target Start/End: Complemental strand, 44311727 - 44311619
Alignment:
Q  271 tgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaac 370  Q
    |||||||||||||| |||||||||||| ||||| ||||||| || ||||| |||||||||||||| ||| ||||||| |||||||||| | ||||||||     
T  44311727 tgctcgaaagagctcttatgcttgctg-cttgttcagggagctgatggcacttggattttgataccgtgctggcggtcgatccattcgccatttttaaat 44311629  T
Q  371 tctaactgtt 380  Q
     |||||||||    
T  44311628 cctaactgtt 44311619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 1745422 - 1745485
Alignment:
Q  92 ttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgt 155  Q
    |||||| | |||||||| |||||||||||||||||||||||||  |||||||||||||||||||    
T  1745422 ttaacccgaaagggtctggttactaacgtattggactcatccctcaatctgagttcttacgcgt 1745485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 451
Target Start/End: Original strand, 44274348 - 44274395
Alignment:
Q  404 attttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgc 451  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||    
T  44274348 attttttgtaacttggtttcgcacccatgcgcgagttcgctgggttgc 44274395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 490
Target Start/End: Original strand, 21081744 - 21081834
Alignment:
Q  400 tcatattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagt 490  Q
    ||||| |||||||||||||||||||||| |||| ||| ||||||||| |||||   ||||||||| |   ||||||| |||||||||||||    
T  21081744 tcatactttttgtaacttggtttcgcgcgcataagcgggttcgctggattgcgcatgtgattaatgattttttgttaggatagattagagt 21081834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 462
Target Start/End: Complemental strand, 44206952 - 44206803
Alignment:
Q  313 tgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaacttctcata-ttttttg 411  Q
    |||||||| |||||||| | ||| ||||||||||| |||||||||| | || ||||||||||  |||| | || | |  || |||| ||||| |||||||    
T  44206952 tgttggcacttggattt-gttaccgtgttggcggtcgatccattcgccattcttaaactctagttgttctcgacagattttcacttttcatacttttttg 44206854  T
Q  412 taacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgatta 462  Q
    |||| |||||||| |||| |||| | ||||||||||||||| | |||||||    
T  44206853 taacctggtttcgtgcccgtacgtgggttcgctgggttgcgcctgtgatta 44206803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 314 - 427
Target Start/End: Original strand, 32338357 - 32338470
Alignment:
Q  314 gttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaacttctcatattttttgta 413  Q
    ||||||| |||||||||| |||  ||||||||||  ||||||||| | |||||| ||| |||||||| ||     | ||| |||| ||||||||||||||    
T  32338357 gttggcacttggattttgttaccatgttggcggtcaatccattcgccatttttatactttaactgttcttttgcaatgttcacttttcatattttttgta 32338456  T
Q  414 acttggtttcgcgc 427  Q
    ||||||||||||||    
T  32338457 acttggtttcgcgc 32338470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 510
Target Start/End: Original strand, 38838465 - 38838573
Alignment:
Q  402 atattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagtggattcactag 501  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||| ||||| |||| || | | ||  |||||| |||||| |||  || ||| |||| |    
T  38838465 atattttttgtaacttgatttcgctcccatacgcgggttcgctggcttgcgcccgtaatgagtgaatatttgttctgatagtttaaggttgatccacttg 38838564  T
Q  502 gtctgtttt 510  Q
    |||||||||    
T  38838565 gtctgtttt 38838573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 400 - 455
Target Start/End: Complemental strand, 23096464 - 23096409
Alignment:
Q  400 tcatattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtcc 455  Q
    |||| ||||||||||| ||||||||||||| ||| |||||||||| ||||||||||    
T  23096464 tcatcttttttgtaacctggtttcgcgcccgtacacgagttcgctaggttgcgtcc 23096409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 273 - 356
Target Start/End: Original strand, 27433332 - 27433415
Alignment:
Q  273 ctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccatt 356  Q
    |||||||||||| |||||||||| |  |||| ||||||||| |||||| |||||||||||||  |||||| | || ||||||||    
T  27433332 ctcgaaagagcttttatgcttgcggatttgttcagggagtttttggcacttggattttgatatcgtgttgacagttgatccatt 27433415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 41839803 - 41839740
Alignment:
Q  92 ttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgt 155  Q
    |||||||| |||||||| |||||| ||||||||||||||||||   ||||||||||||| ||||    
T  41839803 ttaacctgaaagggtcttgttactgacgtattggactcatccctcgatctgagttcttatgcgt 41839740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 450
Target Start/End: Complemental strand, 2406454 - 2406393
Alignment:
Q  391 gttaacttctcata--ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttg 450  Q
    |||||||| |||||  |||||||||||||||||| | |||| ||||||||||||||||||||    
T  2406454 gttaacttttcatactttttttgtaacttggttttgagcccgtacgcgagttcgctgggttg 2406393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 452
Target Start/End: Complemental strand, 41421447 - 41421273
Alignment:
Q  279 agagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaa-ctctaact 377  Q
    |||||| || ||||| |||  |||| ||||||| ||||||||  ||||||||| ||| ||||||||||| ||||||| ||   | | | || | ||||||    
T  41421447 agagctcttttgctttctgctttgttcagggagctgttggcacgtggattttgttaccgtgttggcggtcgatccatacgctatgtatgaatccctaact 41421348  T
Q  378 gttattgaaataggttaacttctcatattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcg 452  Q
    ||| || | ||| ||| |||| |||| ||| |||||||||||||||| || |||| | | |||||||||||||||    
T  41421347 gttctttacatacgttcacttttcatctttgttgtaacttggtttcgagctcatatgtgggttcgctgggttgcg 41421273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 375
Target Start/End: Complemental strand, 41839702 - 41839632
Alignment:
Q  305 cagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaa 375  Q
    ||||||| | ||| || |||||||||| ||| ||||||||||| |||||||||||| |||||| |||||||    
T  41839702 cagggagctattgacacttggattttgttaccgtgttggcggtcgatccattcgtcatttttatactctaa 41839632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 405 - 462
Target Start/End: Original strand, 25100570 - 25100627
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgatta 462  Q
    ||||||||||  ||||||||||||| |||||| ||| ||||||||||||| |||||||    
T  25100570 ttttttgtaatctggtttcgcgcccgtacgcgggtttgctgggttgcgtctgtgatta 25100627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 29460012 - 29459963
Alignment:
Q  270 atgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggc 319  Q
    ||||||||||||||| ||||||||||||  |||| |||||||||||||||    
T  29460012 atgctcgaaagagctcttatgcttgctgctttgttcagggagttgttggc 29459963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 44136775 - 44136860
Alignment:
Q  70 aacctgaaagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgt 155  Q
    |||| |||||||| ||||  ||| |||| | |||||||| |||||| ||||||||||||||||||   ||| ||||||||||||||    
T  44136775 aacccgaaagggtctggtcatgtcaacccgaaagggtctggttactgacgtattggactcatccctcgatccgagttcttacgcgt 44136860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 21081557 - 21081609
Alignment:
Q  101 aagggtctagttactaacgtattggactcatcccataatctgagttcttacgc 153  Q
    ||||||||||||||| ||||||||| |||||||| | || |||||||||||||    
T  21081557 aagggtctagttactgacgtattggtctcatcccttgatatgagttcttacgc 21081609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 358
Target Start/End: Complemental strand, 29847817 - 29847730
Alignment:
Q  270 atgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcg 358  Q
    |||||||||| |||| ||||||||||||   ||| ||||||| || ||||| ||||| |||||||| ||||||| ||| ||||||||||    
T  29847817 atgctcgaaaaagcttttatgcttgctggtgtgttcagggagctgctggcacttgga-tttgataccgtgttggtggtcgatccattcg 29847730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 450
Target Start/End: Original strand, 7784902 - 7784952
Alignment:
Q  400 tcatattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttg 450  Q
    |||| |||||||||||||||||||| || | |||||| |||||||||||||    
T  7784902 tcatcttttttgtaacttggtttcgagctcgtacgcgggttcgctgggttg 7784952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 29847686 - 29847636
Alignment:
Q  402 atattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcg 452  Q
    ||||||||| ||||||||||||| |||| |||||| |||||||| ||||||    
T  29847686 atattttttataacttggtttcgtgcccgtacgcgggttcgctgagttgcg 29847636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 44311797 - 44311756
Alignment:
Q  198 tctctgatgtttccaggtctgttgaggtctgcagatttcaag 239  Q
    |||||||||||||||| ||||||||| ||||||| |||||||    
T  44311797 tctctgatgtttccagatctgttgagttctgcaggtttcaag 44311756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 490
Target Start/End: Complemental strand, 53813774 - 53813689
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagt 490  Q
    ||||||| ||| ||||||||||||| |||||   |||||||||||||| | ||||||| |  |  ||||||| |||||||||||||    
T  53813774 ttttttgcaacctggtttcgcgcccgtacgcagattcgctgggttgcgccagtgattagtatatatttgttaggatagattagagt 53813689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 489
Target Start/End: Original strand, 21121837 - 21121920
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagag 489  Q
    |||||||||||||||| |||| ||| || ||| |||||||||||||||   ||||||| ||  | ||||||| ||||||||||||    
T  21121837 ttttttgtaacttggtctcgcacccgtatgcgggttcgctgggttgcgctagtgattagtt-tattttgttaggatagattagag 21121920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 41839600 - 41839548
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgt 457  Q
    ||||||||||| | |||| ||||||||||||| ||||||||| ||||| ||||    
T  41839600 ttttttgtaaccttgttttgcgcccatacgcgggttcgctggattgcgcccgt 41839548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 184 - 578
Target Start/End: Original strand, 31946260 - 31946657
Alignment:
Q  184 ttgactgctttaactctctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcgaaagagc 283  Q
    ||||||||||| |||||||||||||| |||||| |||||||| ||||| ||||||||||||||||||| ||||||| || ||||||||||||||||||||    
T  31946260 ttgactgctttgactctctgatgttttcaggtccgttgaggtttgcaggtttcaagtcgtcttgtattcctacactctggtatttgatgctcgaaagagc 31946359  T
Q  284 tgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttatt 383  Q
    ||||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||||   |||||||||||||| ||||||||||| |||||||    
T  31946360 tgttatgcttgttgtcttgtgcagggagctgttggcacttggattttgataccgtgttggcgggcaatccattcgtcgttcttaaactctaattgttatt 31946459  T
Q  384 gaaataggttaacttctcatattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgataga 483  Q
    |  | ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||||    
T  31946460 ggcaaaggttaacttctcatattttttgtaacttggtttcgcgcccgtacgcgggttcgctgggttgcgtccttgattagttaaactttgttatgataga 31946559  T
Q  484 ttagagtggattcactaggtctgttttcatcgatgtatttccttttgggttgttcctgggttagattttatgt---ccccggtctttgtatctctctc 578  Q
    ||||||||||| || ||| |||||||||||||||||||  || |||||||||| |||| || || ||||||||   |||| |||||||||||||||||    
T  31946560 ttagagtggatccattagatctgttttcatcgatgtatccccctttgggttgtacctgagtaaggttttatgttccccccagtctttgtatctctctc 31946657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 90 - 344
Target Start/End: Complemental strand, 3008906 - 3008661
Alignment:
Q  90 tgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgact 189  Q
    |||||||| | |||||||| |||||||||||||| |||||||||    |||||||||||||| |||||||||||      ||||||||||| || ||| |    
T  3008906 tgttaacccgaaagggtctggttactaacgtattagactcatccttcgatctgagttcttacacgtatgtttga------ttgtgtttggtggcctgatt 3008813  T
Q  190 gctttaactctctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcgaaagagctgttat 289  Q
     |||  ||||| |||||||||||| | ||||||| |||| || ||||||||||| |||| |  || |||  || || || ||||| ||||||||| ||||    
T  3008812 tcttcgactctatgatgtttccagatttgttgagatctgtaggtttcaagtcgtattgtctgccttcacattggtacttcatgcttgaaagagct-ttat 3008714  T
Q  290 gcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggc 344  Q
    |||||||| ||||| ||||||||||||||||  |||||||||||| |||||||||    
T  3008713 gcttgctg-cttgttcagggagttgttggca-ctggattttgatagtgtgttggc 3008661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 306 - 573
Target Start/End: Complemental strand, 592864 - 592598
Alignment:
Q  306 agggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaacttctcatat 405  Q
    |||| |||||||| | || ||||||||||||||||||| ||| |||  |||   |||||||| ||| ||||||||||||  | ||||| ||||||| |||    
T  592864 agggggttgttggtatttagattttgatactgtgttggtggtcgattgatttaccgtttttatactttaactgttattggtaaaggtttacttctcgtat 592765  T
Q  406 tttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagtggattcactaggtct 505  Q
    |||| ||||| ||||||||||| | ||  |  ||||||| ||||||||||||||||| |  |  |||||||||||||||||  || ||||| |||||| |    
T  592764 tttt-gtaacctggtttcgcgctcctatacaggttcgctaggttgcgtccgtgattagtggatttttgttatgatagattatggttgattctctaggttt 592666  T
Q  506 gttttcatcgatgtatttccttttgggttgttcctgggttagattttatgtccccggtctttgtatct 573  Q
    ||||| || |||||||  || ||| ||||||  |||| | |  |||||| ||||||||||||||||||    
T  592665 gtttttatggatgtataaccatttaggttgtatctggatcaagttttatatccccggtctttgtatct 592598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 170 - 358
Target Start/End: Original strand, 15563566 - 15563751
Alignment:
Q  170 ttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatatttg 269  Q
    |||| |||||| |||||||| ||   ||||||||||||||| || ||||||||| | ||||  |||| |||||||| ||| |  |||||||   ||||||    
T  15563566 ttgtatttggtagcttgactactcggactctctgatgtttctagatctgttgagatttgcaagtttctagtcgtctagtagtcttacactag--tatttg 15563663  T
Q  270 atgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcg 358  Q
    ||||||||||||||| ||||| ||||||| || |  |||||| ||||  || ||| |||||||||||||||||| ||| ||||||||||    
T  15563664 atgctcgaaagagcttttatgtttgctgtatt-tttagggagctgttcacacttgaattttgatactgtgttggtggtcgatccattcg 15563751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 358
Target Start/End: Original strand, 6189615 - 6189900
Alignment:
Q  69 aaacctgaaagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttc 168  Q
    ||||| |||||||| |  |||| ||||| || ||||| || |||||||| ||||||||||||||||   |||| | |||||| || | ||||||||  |     
T  6189615 aaacccgaaagggtctctttctattaacatgtaagggcctggttactaatgtattggactcatccctcgatctaaattcttaggcatctgtttgaaactt 6189714  T
Q  169 gttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatattt 268  Q
     ||||||||||   ||||||| |||  ||||  |||||| ||||| | ||||||| | ||| | ||||||| |||  |||    |||||||||| || ||    
T  6189715 tttgtgtttggagacttgacttcttcgactcattgatgtgtccagatttgttgagatttgctggtttcaaggcgtgatgtcaacctacactatggtactt 6189814  T
Q  269 gatgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcg 358  Q
     |||||| || ||||| ||||||||||||  ||   |||||||||||||| | ||| |||||||| | ||||||||||| ||||||||||    
T  6189815 catgctcaaaggagct-ttatgcttgctgggtt---cagggagttgttggtacttgaattttgattccgtgttggcggtcgatccattcg 6189900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 8209982 - 8210060
Alignment:
Q  77 aagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgt 155  Q
    |||||| |||||||  ||||| |||||| ||| ||||||||| |||||||||||||||   ||||||||||||||||||    
T  8209982 aagggtctggttcttctaacccggaaggttctggttactaacttattggactcatccctcgatctgagttcttacgcgt 8210060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 460
Target Start/End: Complemental strand, 1717572 - 1717512
Alignment:
Q  400 tcatattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgat 460  Q
    ||||||||||||||||||||||||| | || |||||| | ||||||||||||||| |||||    
T  1717572 tcatattttttgtaacttggtttcgagtccgtacgcgggatcgctgggttgcgtctgtgat 1717512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 452
Target Start/End: Original strand, 6257419 - 6257567
Alignment:
Q  305 cagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaacttctcata 404  Q
    ||||||| ||||| || |||||||||||||| ||||||| | | |||||| ||  | ||| |||||||||  |||| |    |||  || |||| |||||    
T  6257419 cagggagctgttgacacttggattttgataccgtgttggtgatcgatccactcaccatttataaactctagatgttctattcatatattcacttttcata 6257518  T
Q  405 tt-ttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcg 452  Q
    || ||||||||||||||||||| ||| |||||| |||||||||||||||    
T  6257519 ttattttgtaacttggtttcgcacccgtacgcgggttcgctgggttgcg 6257567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 445
Target Start/End: Complemental strand, 17458938 - 17458898
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctg 445  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  17458938 ttttttgtaacttggtttcgcgcccgtacgcgagttcgctg 17458898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 3709593 - 3709550
Alignment:
Q  112 tactaacgtattggactcatcccataatctgagttcttacgcgt 155  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  3709593 tactaacgtattggactcatcccacaatatgagttcttacgcgt 3709550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 358
Target Start/End: Complemental strand, 30625675 - 30625582
Alignment:
Q  264 tatttgatgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcg 358  Q
    |||| |||||||||||||||| ||||| ||| ||| || || ||||||| |||| || ||| |||||| ||| ||||||||||| ||||||||||    
T  30625675 tattggatgctcgaaagagcttttatgtttgatgtatt-tgtagggagtagttgacacttgaattttgttaccgtgttggcggtcgatccattcg 30625582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 6257236 - 6257287
Alignment:
Q  113 actaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaa 164  Q
    |||||| |||||||||||||||   |||||||||||||||||| ||||||||    
T  6257236 actaacatattggactcatccctcgatctgagttcttacgcgtttgtttgaa 6257287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 29032697 - 29032744
Alignment:
Q  104 ggtctagttactaacgtattggactcatcccataatctgagttcttac 151  Q
    ||||| |||||||||||||||||||||||||   ||||||||||||||    
T  29032697 ggtctggttactaacgtattggactcatccctcgatctgagttcttac 29032744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 17459231 - 17459193
Alignment:
Q  111 ttactaacgtattggactcatcccataatctgagttctt 149  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  17459231 ttactaacgtattggactcatcccacaatttgagttctt 17459193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 462
Target Start/End: Original strand, 6189950 - 6190007
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgatta 462  Q
    |||||||||||||||||||||| || ||| |  ||||||| |||||||| ||||||||    
T  6189950 ttttttgtaacttggtttcgcgaccgtactcaggttcgctaggttgcgttcgtgatta 6190007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 32718182 - 32718098
Alignment:
Q  270 atgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccat 355  Q
    ||||||||||||||| ||||| |||||| ||||| |||| || ||||||||  | |||| || ||| ||||||||||| |||||||    
T  32718182 atgctcgaaagagctcttatgtttgctg-cttgttcaggaagctgttggcacgtagattatgttaccgtgttggcggtcgatccat 32718098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 31303999 - 31304075
Alignment:
Q  75 gaaagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttac 151  Q
    ||||| || ||||||  |||||| | |||||||| |||||| |||||||| |||||||||   ||||||||||||||    
T  31303999 gaaagagtttggttcgattaacccgaaagggtctggttactgacgtattgaactcatccctcgatctgagttcttac 31304075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 240; Significance: 1e-132; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 23 - 521
Target Start/End: Original strand, 48563172 - 48563670
Alignment:
Q  23 gggtggtcgaagacttttggccttttttgacgtcgttttgttttataaacctgaaagggtatggttctgttaacctggaagggtctagttactaacgtat 122  Q
    |||||||||||||||||||||||  ||||| || |||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| |||    
T  48563172 gggtggtcgaagacttttggcctagtttgatgtggtttggttttataaacctgaaagggtatggttctattaacctgaaagggtctggttactaacatat 48563271  T
Q  123 tggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctgttga 222  Q
    |||||||||||||  |||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  48563272 tggactcatcccacgatctaagttcttacgcgtatgtttgaatctagttgtgtttggttgcttgactactttgactctctgttgtttccaggtctgttga 48563371  T
Q  223 ggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagt 322  Q
    | ||||||| ||||||||||||||||||  ||||| | || ||||||||||||||||||||| ||||||||| ||| |||| |||||||||||||||| |    
T  48563372 gatctgcaggtttcaagtcgtcttgtatgcctacagtctggtatttgatgctcgaaagagctattatgcttgttgttttgttcagggagttgttggcact 48563471  T
Q  323 tggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaacttctcata-ttttttgtaacttggtt 421  Q
    || ||||||||||| ||||| || | |||||||||| || ||||||||||||| ||||||||  | | ||| |||||||||| |||||| |||| |  ||    
T  48563472 tgaattttgatactatgttgacgatcgatccattcgccg-ttttaaactctaagtgttattggcaaatgtttacttctcatatttttttttaacctaatt 48563570  T
Q  422 tcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagtggattcactaggtctgttttcatcgatgtat 521  Q
    |||||||| || | | ||||| ||||||||  | ||||||| | || | |||||||||||||||| ||| ||| ||||||||||||||| ||||||||||    
T  48563571 tcgcgcccgtatgtgggttcgttgggttgcacctgtgattagtgaatcgttgttatgatagattatagttgatccactaggtctgtttttatcgatgtat 48563670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 24 - 311
Target Start/End: Original strand, 52148735 - 52149027
Alignment:
Q  24 ggtggtcgaagacttttggcct-tttttgacgtcgttttgttttataaacctgaaagggtatggttctgttaacctggaagggt----ctagttactaac 118  Q
    |||||| ||||||||||||||| ||||||| || ||||  ||| | |||||| ||||||||||||| |||||||| | ||||||    ||| ||| ||||    
T  52148735 ggtggttgaagacttttggcctctttttgatgtggtttgatttcaaaaacctaaaagggtatggttatgttaacccgaaagggttgcgctaattaataac 52148834  T
Q  119 gtattggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctg 218  Q
    |||||||| || ||||   ||||||||||||| |||||||||||||  || ||||||||||| || |||||||||   |||||||||||||||| ||||     
T  52148835 gtattggaatcgtccctcgatctgagttcttaagcgtatgtttgaacgtcattgtgtttggtggcctgactgcttcgcctctctgatgtttccatgtcta 52148934  T
Q  219 ttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcgaaagagctgttatgcttgctgtcttgtgcagggag 311  Q
    |||||  |||||| ||||||||| |||||| |  ||||||| || ||||||||||||||||||||| || |||||||||  |||| |||||||    
T  52148935 ttgagacctgcaggtttcaagtcatcttgtctagctacactctggtatttgatgctcgaaagagcttttttgcttgctgctttgttcagggag 52149027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 403 - 506
Target Start/End: Complemental strand, 14167734 - 14167631
Alignment:
Q  403 tattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagtggattcactagg 502  Q
    ||||||||||||||||||||||||| ||||| |  ||||||| ||||||| | ||||||||| ||| |||||||||||||||||| |||||| |||||||    
T  14167734 tattttttgtaacttggtttcgcgcgcatacacaggttcgctaggttgcgcctgtgattaatgaaattttgttatgatagattagggtggatccactagg 14167635  T
Q  503 tctg 506  Q
    ||||    
T  14167634 tctg 14167631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 274 - 499
Target Start/End: Complemental strand, 18628959 - 18628735
Alignment:
Q  274 tcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactct 373  Q
    ||||||||||| ||||||||| |||  ||| ||||||| |||||||| |||||||||| ||| ||||||||||| |||||||||| | |  | | |||||    
T  18628959 tcgaaagagcttttatgcttgttgt--tgttcagggagctgttggcacttggattttgttaccgtgttggcggtcgatccattcgccataatcacactct 18628862  T
Q  374 aactgttattgaaataggttaacttctcata-ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaacttt 472  Q
    || |||| |    | | ||| |||| ||||  ||||||||||| ||||||||||||| |||||| ||||||| ||||||| ||||||||| | ||  |||    
T  18628861 aaatgttctatgtagatgttcacttttcattcttttttgtaacctggtttcgcgcccgtacgcgggttcgctaggttgcgcccgtgattagtgaattttt 18628762  T
Q  473 gttatgatagattagagtggattcact 499  Q
    |||| ||||||| ||||| ||| ||||    
T  18628761 gttaggatagataagagtagatccact 18628735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 405 - 530
Target Start/End: Complemental strand, 18650304 - 18650178
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagtggattcactaggtc 504  Q
    ||||||||||||||||||||||||| |||||| |||||||| |||||||| ||||||| |  |  ||||||| ||||| ||||||||||| |||| || |    
T  18650304 ttttttgtaacttggtttcgcgcccgtacgcgggttcgctgagttgcgtctgtgattagtggatttttgttaggataggttagagtggatccacttggac 18650205  T
Q  505 tg--ttttcatcgatgtatttccttttg 530  Q
    ||  |||||| |||||||||||| ||||    
T  18650204 tgatttttca-cgatgtatttccgtttg 18650178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 273 - 490
Target Start/End: Original strand, 11871482 - 11871698
Alignment:
Q  273 ctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactc 372  Q
    |||||||||||| |||| |||| |||  ||| |||||||||||||||| |||||||||| ||| ||||| ||||| |||||||||| | |  ||| ||||    
T  11871482 ctcgaaagagcttttattcttgatgt--tgttcagggagttgttggcacttggattttgttaccgtgttagcggtcgatccattcgccataattacactc 11871579  T
Q  373 taactgttattgaaataggttaacttctca-tattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactt 471  Q
     |||| || ||   | | ||| |||| ||| | ||||||||||| ||||||| ||||  |||| | ||||| ||||||||| | ||||||| | ||  ||    
T  11871580 caactattctttgcagatgttcacttttcattcttttttgtaacatggtttcacgcctgtacgtgggttcgttgggttgcgccagtgattattgaatttt 11871679  T
Q  472 tgttatgatagattagagt 490  Q
    ||||| |||||||||||||    
T  11871680 tgttaggatagattagagt 11871698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 272 - 373
Target Start/End: Original strand, 26759427 - 26759526
Alignment:
Q  272 gctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaact 371  Q
    ||||||||||||| |||||||||  ||  ||  ||||||| |||||||| |||||||||| ||||||||||||||| |||||||||| | | ||||||||    
T  26759427 gctcgaaagagcttttatgcttgtcgt--tgaccagggagctgttggcacttggattttgttactgtgttggcggtcgatccattcgccatatttaaact 26759524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 18650529 - 18650445
Alignment:
Q  69 aaacctgaaagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgc 153  Q
    ||||| |||||||| ||||||  |||||| |||||||| | |||||| |||||||||||||||||| | |||| |||||||||||    
T  18650529 aaacccgaaagggtgtggttcgtttaacccggaagggtatggttactgacgtattggactcatcccttgatcttagttcttacgc 18650445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 18629030 - 18628967
Alignment:
Q  92 ttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgt 155  Q
    ||||| || |||||||| |||||| ||||||||||||||||||  |||||||||||||||||||    
T  18629030 ttaacttgaaagggtctggttactgacgtattggactcatccctcaatctgagttcttacgcgt 18628967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 356
Target Start/End: Complemental strand, 14168007 - 14167771
Alignment:
Q  122 ttggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctgttg 221  Q
    |||||||||||||   ||||| || ||||||||| | ||||||    |||||||||||| |||||| |  | ||||||| |||||||||||| |||||||    
T  14168007 ttggactcatccctcgatctgggtccttacgcgtgtatttgaaacctgttgtgtttggtggcttgattattctaactctatgatgtttccagatctgttg 14167908  T
Q  222 aggtctgcagatttcaagtcgtcttgtatttcta--cactatgatatttgatgctcgaaag-agctgttatgcttgctgtcttgtgcagggagttgttgg 318  Q
    || | ||||| |||||||| |||||||   |  |  ||||  | |  || ||||| ||||  |||| ||||||||||||| || | ||||||||||||||    
T  14167907 agatttgcaggtttcaagtggtcttgtcggtagagacacttgggttcttcatgcttgaaaacagcttttatgcttgctgtattattcagggagttgttgg 14167808  T
Q  319 cagttggattttgatactgtgttggcggtggatccatt 356  Q
    || ||||| |||||||| ||||| ||||| ||||||||    
T  14167807 cacttgga-tttgataccgtgttagcggtcgatccatt 14167771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 315 - 380
Target Start/End: Complemental strand, 26925070 - 26925005
Alignment:
Q  315 ttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgtt 380  Q
    |||||| |||||||||| ||||||||||||||| |||||||||| | | |||||||||| ||||||    
T  26925070 ttggcacttggattttgttactgtgttggcggtcgatccattcgccatatttaaactcttactgtt 26925005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 453
Target Start/End: Original strand, 15309133 - 15309279
Alignment:
Q  305 cagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaacttctcata 404  Q
    |||||||||||||||  |||||||||| ||| ||||||||||| |||||||||| |  |||||||||||||||||| ||   | | ||| |||  | ||     
T  15309133 cagggagttgttggcgcttggattttg-taccgtgttggcggtcgatccattcg-ccattttaaactctaactgttttttgcaaacgttcactctttatg 15309230  T
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgt 453  Q
    |||||||||||||||||||| |||  || ||  |||||||| |||||||    
T  15309231 ttttttgtaacttggtttcgtgcctgtaagcaggttcgctgagttgcgt 15309279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 271 - 358
Target Start/End: Complemental strand, 2688330 - 2688246
Alignment:
Q  271 tgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcg 358  Q
    |||| ||||||||| |||||||||||| |||||||||||||||||||||  ||||| |||| ||| |||||||||||  |||||||||    
T  2688330 tgctagaaagagct-ttatgcttgctg-cttgtgcagggagttgttggcgcttgga-tttgttaccgtgttggcggtcaatccattcg 2688246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 305 - 380
Target Start/End: Original strand, 33323984 - 33324059
Alignment:
Q  305 cagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgtt 380  Q
    ||||||| |||||||| |||||||| | ||||||||||||||| |||||||||| | |  ||||||||||| ||||    
T  33323984 cagggagctgttggcacttggatttcgttactgtgttggcggtcgatccattcgccataattaaactctaattgtt 33324059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 145
Target Start/End: Original strand, 19757726 - 19757796
Alignment:
Q  75 gaaagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagt 145  Q
    |||||||| |||||   |||||| | |||||||||||| ||||||||||||||||||||||  ||||||||    
T  19757726 gaaagggtttggtttgtttaacccgaaagggtctagttcctaacgtattggactcatcccacgatctgagt 19757796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 360
Target Start/End: Complemental strand, 25023385 - 25023299
Alignment:
Q  274 tcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtc 360  Q
    ||||||||||  ||||||||| ||  |||| ||| |||||||||||| ||||||||||||||  | |||||||| ||| ||||||||    
T  25023385 tcgaaagagcctttatgcttgttgctttgttcagtgagttgttggcacttggattttgataccatattggcggtcgattcattcgtc 25023299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 50959577 - 50959523
Alignment:
Q  101 aagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgt 155  Q
    |||||||| |||||| ||||||||||||||||||   ||||||||||||||||||    
T  50959577 aagggtctggttactgacgtattggactcatccctcgatctgagttcttacgcgt 50959523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 23777109 - 23777178
Alignment:
Q  286 ttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcg 358  Q
    |||||||||||||  ||| ||||||| |||||||| |||||||||| ||| ||||||||||| ||||||||||    
T  23777109 ttatgcttgctgt--tgttcagggagctgttggcacttggattttg-taccgtgttggcggtcgatccattcg 23777178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 405 - 490
Target Start/End: Original strand, 26762452 - 26762537
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagt 490  Q
    ||||||||||  ||||||||||||| |||||  ||||||||||||||| | ||||||| |  |  ||||||| |||||||||||||    
T  26762452 ttttttgtaatctggtttcgcgcccgtacgctggttcgctgggttgcgccagtgattagtgtatttttgttaggatagattagagt 26762537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 405 - 490
Target Start/End: Complemental strand, 50959385 - 50959301
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagt 490  Q
    ||||||||||  |||||||||||| ||||||| ||||||| |||||||   |||||| | | || |||||||||||||||||||||    
T  50959385 ttttttgtaatctggtttcgcgcctatacgcgggttcgctaggttgcgcttgtgatt-agtgaattttgttatgatagattagagt 50959301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 153
Target Start/End: Complemental strand, 2688490 - 2688447
Alignment:
Q  110 gttactaacgtattggactcatcccataatctgagttcttacgc 153  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||    
T  2688490 gttactaacgtattggactcatcccacgatctgagttctaacgc 2688447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 16256445 - 16256520
Alignment:
Q  77 aagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacg 152  Q
    |||||| ||||||| |||||| | ||||||||  || || ||||||||||||||||||   |||||||||||||||    
T  16256445 aagggtctggttcttttaacccgaaagggtctgtttgctgacgtattggactcatccctcgatctgagttcttacg 16256520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 452
Target Start/End: Original strand, 19757947 - 19757994
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcg 452  Q
    |||||| |||| ||||||||||||| |||||| |||||||||||||||    
T  19757947 ttttttttaacctggtttcgcgcccgtacgcgggttcgctgggttgcg 19757994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 42241478 - 42241525
Alignment:
Q  305 cagggagttgttggcagttggattttgatactgtgttggcggtggatc 352  Q
    |||||||||||||||| |||||||||| ||| ||||||||||| ||||    
T  42241478 cagggagttgttggcacttggattttgttaccgtgttggcggtcgatc 42241525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 451
Target Start/End: Complemental strand, 3249256 - 3249210
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgc 451  Q
    ||||||||||||| ||||||||||| |||| | ||||||||||||||    
T  3249256 ttttttgtaacttagtttcgcgcccctacgtgggttcgctgggttgc 3249210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 25023562 - 25023482
Alignment:
Q  79 gggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgtatgt 159  Q
    |||| ||||| |||||||  | |||||| | |||||| |||||||||| |||||||  ||| |||||| ||||||||||||    
T  25023562 gggtttggttttgttaactagaaagggtttggttactgacgtattggattcatccctcaatttgagtttttacgcgtatgt 25023482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 25077767 - 25077851
Alignment:
Q  272 gctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccatt 356  Q
    |||||||| |||| ||||||||||||  |||| ||||||| ||||| || ||| ||||||||| ||| |||  ||| ||||||||    
T  25077767 gctcgaaaaagcttttatgcttgctgatttgttcagggagctgttgtcacttgaattttgatattgtattgaaggtcgatccatt 25077851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 175; Significance: 7e-94; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 38 - 578
Target Start/End: Original strand, 28002574 - 28003113
Alignment:
Q  38 tttggccttttttgacgtcgttttgttttataaacctgaaagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccata 137  Q
    |||||||| |||||| || | || |||| | |||||||||||||||||  |||| ||| ||| |||||||| |||| |||||||||| |||||||||       
T  28002574 tttggcctcttttgatgtggattggtttcaaaaacctgaaagggtatgactctgctaatctgaaagggtctggttattaacgtattgaactcatccctcg 28002673  T
Q  138 atctgagttcttacgc-gtatgtttgaatttcgttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctgttgaggtctgcagatttc 236  Q
    |||||||||||||||  || ||||||||| |||||||||||||| || ||||| |||  |||||||||||||| || || ||||||| ||||||| ||||    
T  28002674 atctgagttcttacgatgtctgtttgaatctcgttgtgtttggtggcctgactacttcgactctctgatgttttcaagtatgttgagatctgcaggtttc 28002773  T
Q  237 aagtcgtcttgtatttctacactatgatatttgatgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatact 336  Q
    |||| ||| ||| |   |||||| || | ||| ||||||||||||||| ||||||||||||  |||| ||||||| |  ||||| || |||||||||||     
T  28002774 aagttgtcgtgtctgcatacactttggttttttatgctcgaaagagcttttatgcttgctgctttgttcagggagct--tggcacttagattttgatacc 28002871  T
Q  337 gtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaacttctcatattttttgtaacttggtttcgcgcccatacgcg 436  Q
    |||||||||||  ||||||||| |||||| |||| |||||| ||||||| | ||||| ||||||||||||||||||||| | |||| |||||| ||||||    
T  28002872 gtgttggcggtcaatccattcgccgttttcaaaccctaactattattgacaaaggtttacttctcatattttttgtaacatagttttgcgcccgtacgcg 28002971  T
Q  437 agttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagtggattcactaggtctgttttcatcgatgtatttccttttgggttgt 536  Q
     ||||||| ||||||||||||||||| |  |  |||||||||||||||||| || |||||| |||||||||||  | || |||||  || ||||||||||    
T  28002972 ggttcgctaggttgcgtccgtgattagtggatttttgttatgatagattagggtagattcattaggtctgtttataacgttgtatccccatttgggttgt 28003071  T
Q  537 tcctgggttagattttatgtccccggtctttgtatctctctc 578  Q
     ||||||  |  ||| ||||||||| |||||| |||||||||    
T  28003072 acctgggacatgtttaatgtccccgatctttgcatctctctc 28003113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 15 - 415
Target Start/End: Original strand, 16994388 - 16994783
Alignment:
Q  15 cagagatggggtggtcgaagacttttggcct-tttttgacgtcgttttgttttataaacctgaaagggtatggttctgttaacctggaagggtctagtta 113  Q
    ||||||| ||||||| ||||||||||||||| ||||||| || ||    || || |||| |||||||||||| || |||||||| | ||||||||  |||    
T  16994388 cagagattgggtggttgaagacttttggcctctttttgatgtggtaggtttcta-aaacttgaaagggtatgattttgttaacccgaaagggtctgatta 16994486  T
Q  114 ctaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgactgctttaactctctgatgtttccag 213  Q
    |||   |||||||||| |||| | ||||||||||||||| |||||||||||| | |||||||||||| || ||||||||| || |||||||||||| |||    
T  16994487 ctagtttattggactcgtcccttgatctgagttcttacgtgtatgtttgaatcttgttgtgtttggtggcctgactgcttcaattctctgatgttttcag 16994586  T
Q  214 gtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcgaaagagctgttatgcttgctgtcttgtgcagggagtt 313  Q
    || ||||||| |||||||||||||||||||||||| |  ||||||| || |||||||||||| |||||||| ||||||||| ||  |||| || ||||||    
T  16994587 gtttgttgagatctgcagatttcaagtcgtcttgtctgcctacactctggtatttgatgctcaaaagagcttttatgcttgttgctttgttcatggagtt 16994686  T
Q  314 gttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaac-tgttattgaaataggttaacttctcatattttttgt 412  Q
    ||||||| ||| |||||     |||||||||||| ||| |||||| ||||||| || || ||| ||||||||  | ||||| ||||||||||||||||||    
T  16994687 gttggcacttgtatttt-----tgtgttggcggtcgattcattcgccgttttt-aagtccaacatgttattggcagaggtttacttctcatattttttgt 16994780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 69 - 358
Target Start/End: Original strand, 10623314 - 10623597
Alignment:
Q  69 aaacctgaaagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttc 168  Q
    ||||| |||| ||| ||||||| |||||| |  ||||| | |||||||||||||||||||||||||   ||||||||||| |||| | ||||||||||      
T  10623314 aaacccgaaaaggtctggttctattaacccgatagggtttggttactaacgtattggactcatccctcgatctgagttctaacgcatttgtttgaatt-- 10623411  T
Q  169 gttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatattt 268  Q
       ||||||||| |  | ||| |||| |||||||||||||||||| | ||||||| ||||||| |||||||| ||||||| |  || |||  || |||||    
T  10623412 ---gtgtttggtggtctaacttctttgactctctgatgtttccagatttgttgagatctgcaggtttcaagttgtcttgtctgcctgcacattggtattt 10623508  T
Q  269 gatgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcg 358  Q
     ||||||||||||||| | ||||||||||  |||| |||||||||||||||| ||| ||||||| ||||||||||| || ||||||||||    
T  10623509 catgctcgaaagagct-tcatgcttgctgctttgttcagggagttgttggcaattgtattttgacactgtgttggcagtcgatccattcg 10623597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 69 - 547
Target Start/End: Complemental strand, 27900425 - 27899948
Alignment:
Q  69 aaacctgaaagggtatggttctgttaa--cctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatt 166  Q
    ||||| ||||||||||| || ||||||  || | |||||||| ||||||||| |||||||||||||||   |||||||||||||| ||||||||||||      
T  27900425 aaacccgaaagggtatgtttatgttaaaacccgaaagggtctggttactaacatattggactcatccctcgatctgagttcttacacgtatgtttgaaac 27900326  T
Q  167 tcgttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatat 266  Q
      | |||||||||| || ||||| |||  |||||||||| ||| ||  | |||||| || ||||| |||||||||||||||||   ||||||| || ||     
T  27900325 ctgctgtgtttggtggcctgactacttcgactctctgatattttcaaatttgttgaagtttgcaggtttcaagtcgtcttgtacgcctacactctggtac 27900226  T
Q  267 ttgatgctcgaaagagctgttatgcttgctgtcttg-tgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttt 365  Q
    ||  |||||   |||||  |||||||||||| |||| |  |||||| ||| |||| || ||||||  ||| |||||| |||| ||||||||||  |   |    
T  27900225 tttgtgctctcgagagcctttatgcttgctg-cttgatttagggagctgtcggcacttagatttt-ttaccgtgttgtcggttgatccattcgctgaaat 27900128  T
Q  366 taaactctaactgttattgaaataggttaacttctcatattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaatt 465  Q
    | ||| || ||  || ||| || | ||| | || | |||||||||||||||||||||||| ||| |||||| ||| ||||| ||||| ||||||| |||     
T  27900127 tgaaccctgac--tttttgcaa-atgtttaattttaatattttttgtaacttggtttcgctcccgtacgcgggtttgctggattgcgcccgtgatcaatg 27900031  T
Q  466 aaactttgttatgatagattagagtggattcactaggtct-gttttcatcgatgtatttccttttgggttgttcctgggttag 547  Q
    ||  ||| | | |||||| ||| |||||| ||||||||||  |||  |||| |||||| ||||||| ||||| ||||||||||    
T  27900030 aagttttttaaagatagaatagggtggatccactaggtctaatttatatcgttgtattcccttttgagttgtacctgggttag 27899948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 406 - 506
Target Start/End: Complemental strand, 24957510 - 24957410
Alignment:
Q  406 tttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagtggattcactaggtct 505  Q
    |||||||||||||||||||||||| ||||| |||||||||| ||||| || |||||||| ||  ||||||| |||||||||| |||||| ||||||||||    
T  24957510 tttttgtaacttggtttcgcgcccgtacgcaagttcgctggattgcgcccatgattaatgaatttttgttaagatagattagggtggatccactaggtct 24957411  T
Q  506 g 506  Q
    |    
T  24957410 g 24957410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 271 - 499
Target Start/End: Complemental strand, 20118254 - 20118028
Alignment:
Q  271 tgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaac 370  Q
    |||||||||||||  |||||||||||||  |   |||||||||||||||| |||||||||| ||| || |||||||| |||| ||||||| |||||| |     
T  20118254 tgctcgaaagagcatttatgcttgctgt--tcatcagggagttgttggcacttggattttgttaccgtattggcggtcgatctattcgtcatttttataa 20118157  T
Q  371 tctaactgttattgaaataggttaacttctca-tattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaac 469  Q
    |||||||||| |||    | ||| |||| ||| | ||||||||| ||||||||||||||| |||||| |||||| | |||||| |  |||||| | ||      
T  20118156 tctaactgttcttg-tggaagttcacttttcattcttttttgtagcttggtttcgcgcccgtacgcgggttcgccgagttgcgcctatgattagtgaatt 20118058  T
Q  470 tttgttatgatagattagagtggattcact 499  Q
    ||||||| ||||||||||||| ||| ||||    
T  20118057 tttgttaggatagattagagttgatccact 20118028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 490
Target Start/End: Complemental strand, 31727523 - 31727453
Alignment:
Q  420 tttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagt 490  Q
    |||||||||| |||||| |||||||| |||||||| ||||||| | ||  ||||||| |||||||||||||    
T  31727523 tttcgcgcccgtacgcgggttcgctgagttgcgtctgtgattagtgaacttttgttaggatagattagagt 31727453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 272 - 356
Target Start/End: Complemental strand, 11669247 - 11669163
Alignment:
Q  272 gctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccatt 356  Q
    ||||||||||||| ||||||||||||  || |  |||||||||||| || || |||||||||| |||| || |||| ||||||||    
T  11669247 gctcgaaagagcttttatgcttgctgatttatttagggagttgttgacacttagattttgatattgtgatgacggttgatccatt 11669163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 452
Target Start/End: Original strand, 5907201 - 5907248
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcg 452  Q
    ||||||||||| ||||||||||||| |||||| ||| |||||||||||    
T  5907201 ttttttgtaacctggtttcgcgcccgtacgcgggtttgctgggttgcg 5907248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 10019794 - 10019739
Alignment:
Q  110 gttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaat 165  Q
    |||||||||||||||||||||||||   || ||||||||||||||| || ||||||    
T  10019794 gttactaacgtattggactcatccctcgatttgagttcttacgcgtctgattgaat 10019739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 444
Target Start/End: Original strand, 14737196 - 14737235
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgct 444  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  14737196 ttttttgtaacttggtttcgcgcccgtacgcgtgttcgct 14737235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 24957743 - 24957664
Alignment:
Q  169 gttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgt 248  Q
    |||||||||||| ||||||||  | | |||||||||||||||||  ||||||||| | ||||  |||||||| |||||||    
T  24957743 gttgtgtttggtggcttgactattatgactctctgatgtttccaaatctgttgagatttgcaagtttcaagtagtcttgt 24957664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 462
Target Start/End: Complemental strand, 11669136 - 11669074
Alignment:
Q  400 tcatattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgatta 462  Q
    |||||||||||||||| || |||| ||||| ||  || ||||||||||||||||| |||||||    
T  11669136 tcatattttttgtaacctgatttcacgcccgtatacgggttcgctgggttgcgtctgtgatta 11669074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 5907002 - 5907041
Alignment:
Q  94 aacctggaagggtctagttactaacgtattggactcatccc 134  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  5907002 aacctgaaagggtcta-ttactaacgtattggactcatccc 5907041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 4e-80; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 299 - 578
Target Start/End: Complemental strand, 2770947 - 2770673
Alignment:
Q  299 cttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaactt 398  Q
    ||||||||||||| ||||| || |||||||||||||| |||||||||||  ||||||| |||||||||||||||||||||||||||  | | ||||||||    
T  2770947 cttgtgcagggagctgttgacacttggattttgataccgtgttggcggtcaatccatttgtcgtttttaaactctaactgttattggcaaatgttaactt 2770848  T
Q  399 ctcatattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagtggattcac 498  Q
    ||||||||||||||||||||||||||||||     ||| ||| |||||  |||||||||||||| ||||||||| ||||||||||||||||||||| ||     
T  2770847 ctcatattttttgtaacttggtttcgcgcc-----gcgggtttgctggcctgcgtccgtgattagttaaactttattatgatagattagagtggatccat 2770753  T
Q  499 taggtctgttttcatcgatgtatttccttttgggttgttcctgggttagattttatgtccccggtctttgtatctctctc 578  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||| |  |||||||||||| |||||||||| ||||||    
T  2770752 taggtctgttttcatcgatgtatccccttttgggttgtacctgggtcaagttttatgtccccagtctttgtatatctctc 2770673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 86 - 358
Target Start/End: Complemental strand, 43168819 - 43168550
Alignment:
Q  86 gttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgctt 185  Q
    |||||||| ||| | ||| |||| ||| |||||||||| ||||||||||  ||| |||||||||||| || |||||||  |   ||||| | | | ||||    
T  43168819 gttctgtttacccgaaagagtctggttgctaacgtattagactcatccctcaatttgagttcttacgtgtctgtttgacatcgcttgtgct-gctagctt 43168721  T
Q  186 gactgctttaactctctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcgaaagagctg 285  Q
    |||| |||  |||||||||||||| ||| ||||||||| ||||||| ||||||||||| |||| |   |||||   |||| ||  ||||||||||||||     
T  43168720 gacttcttcgactctctgatgtttgcagatctgttgagatctgcaggtttcaagtcgttttgtttgcttacacgcagatactttgtgctcgaaagagct- 43168622  T
Q  286 ttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcg 358  Q
    ||||||||||| |||||| ||||||||||||| || ||| |||||||||| |||||| | || ||||||||||    
T  43168621 ttatgcttgct-tcttgttcagggagttgttgacatttgaattttgataccgtgttgacagttgatccattcg 43168550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 173 - 506
Target Start/End: Complemental strand, 19932514 - 19932179
Alignment:
Q  173 tgtttggttgcttgactgctttaactctctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtat--ttctacactatgatatttga 270  Q
    |||||||| ||||| || || | ||||||||||||||| || ||||||||| | ||||| |||||||| ||||||| |      |||||  | |  || |    
T  19932514 tgtttggtggcttggctactctgactctctgatgtttctagctctgttgagatttgcaggtttcaagttgtcttgtctgcagacacactcgggtccttca 19932415  T
Q  271 tgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcg-tttttaaa 369  Q
    |||||||||||||| ||||||||||||  |||| ||||||| |||||||| ||||| ||| |||| ||||||||||| ||||||||| |||  |||||||    
T  19932414 tgctcgaaagagcttttatgcttgctgcattgttcagggagctgttggcacttgga-tttcataccgtgttggcggtcgatccattcatcgaattttaaa 19932316  T
Q  370 ctctaactgttatt-gaaataggttaacttctcata-ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaa 467  Q
    | |||| |||| || | |||  ||| | || ||| | ||||||||||||| ||||||||||   ||||| ||||||||||||||| |||| |||  | ||    
T  19932315 ccctaattgttcttcgcaat--gttcatttttcacatttttttgtaactttgtttcgcgcctgcacgcgggttcgctgggttgcgcccgtaattggtgaa 19932218  T
Q  468 actttgttatgatagattagagtggattcactaggtctg 506  Q
      ||||||| |||||||||| || ||| |||||||||||    
T  19932217 tttttgttaagatagattagggttgatccactaggtctg 19932179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 405 - 512
Target Start/End: Complemental strand, 29724992 - 29724885
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagtggattcactaggtc 504  Q
    |||||||||| ||||||||||||   ||||| ||||||||||||||||  |||||||| | |   ||||||| |||||||||| || ||| |||||| |     
T  29724992 ttttttgtaatttggtttcgcgcatgtacgcaagttcgctgggttgcgctcgtgattagtgattgtttgttaggatagattagggttgatccactagatt 29724893  T
Q  505 tgttttca 512  Q
    ||||||||    
T  29724892 tgttttca 29724885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 12466312 - 12466240
Alignment:
Q  308 ggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgtt 380  Q
    |||| ||| |||| |||||||||| ||||||||||| ||| |||||||||| |||  |||||||| |||||||    
T  12466312 ggagctgtcggcacttggattttgttactgtgttggaggtcgatccattcgccgtacttaaactcgaactgtt 12466240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 8e-75; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 23 - 577
Target Start/End: Complemental strand, 35740315 - 35739758
Alignment:
Q  23 gggtggtcgaagacttttggcctt-ttttgacgtcgttttgttttataaacctgaaagggtatggttctgttaacctggaagggtctagttactaacgta 121  Q
    ||||||| ||||||||| |||||| |||||| ||  ||| |||| | ||||| ||||||| |||||||||||| || | |||||||||| || |||||||    
T  35740315 gggtggttgaagacttt-ggccttgttttgatgtgatttggtttcaaaaacccgaaagggaatggttctgttagcccgaaagggtctagctattaacgta 35740217  T
Q  122 ttggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctgttg 221  Q
    |||||||| ||||   ||||||||||||| || | |||| | ||| ||||||||||||| || ||| |||||  | || ||||||||| |||||||||||    
T  35740216 ttggactcgtccctcgatctgagttcttatgcatctgttcgcattccgttgtgtttggtggcctgattgcttcgaatcactgatgttttcaggtctgttg 35740117  T
Q  222 aggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcag 321  Q
    || | ||||| ||||||||||||  || |  ||||||| || ||||||||||||||||||||| ||||||||| ||  |||| |||||||   ||||||     
T  35740116 agatttgcaggtttcaagtcgtcgcgtctgcctacactttggtatttgatgctcgaaagagcttttatgcttgttgctttgttcagggag--cttggcac 35740019  T
Q  322 ttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaacttctcata-ttttttgtaacttggt 420  Q
    ||||||||||||| ||||||||||||  |||||| || |||||| |||| |||||| ||||||  | ||||| |||||||||| ||||||||||  ||||    
T  35740018 ttggattttgataatgtgttggcggtcaatccatacgccgttttcaaaccctaactattattggcaaaggtttacttctcatatttttttgtaatctggt 35739919  T
Q  421 ttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaacttt--gttatgatagattagagtggattcactaggtctgtttt-catcgat 517  Q
    ||||  ||| |||||| | ||||||||||||||||||||||| | ||  |||   |||||||||||||| || ||| || | ||||| ||||  || | |    
T  35739918 ttcgtacccgtacgcgggctcgctgggttgcgtccgtgattagtgaattttttgtttatgatagattagggtagatccattgggtctattttatattgtt 35739819  T
Q  518 gtatttccttttgggttgttcctgggttagattttatgt-ccccggtctttgtatctctct 577  Q
    ||||  || |||||||||| ||||||| || |||||||| |||| ||||||||||||||||    
T  35739818 gtatccccatttgggttgtacctgggtcaggttttatgtcccccagtctttgtatctctct 35739758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 310 - 510
Target Start/End: Original strand, 28421307 - 28421508
Alignment:
Q  310 agttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaacttctcata-tttt 408  Q
    ||||||||| | |||||||||||||| |||||| |||| |||||||||  | | ||||||||||| |||||||    | |  || |||| ||||| ||||    
T  28421307 agttgttggtacttggattttgatacagtgttgacggtcgatccattcaccatatttaaactctatctgttatctgtagattttcacttttcatactttt 28421406  T
Q  409 ttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagtggattcactaggtctgtt 508  Q
    ||||||  ||||||||||||| |||||||||||| ||| ||||    ||||||| | ||  ||||||||||||||||||||| ||| |||| || |||||    
T  28421407 ttgtaatctggtttcgcgcccgtacgcgagttcgttggattgcacatgtgattagtgaatttttgttatgatagattagagtagatccacttggactgtt 28421506  T
Q  509 tt 510  Q
    ||    
T  28421507 tt 28421508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 271 - 358
Target Start/End: Complemental strand, 44558561 - 44558474
Alignment:
Q  271 tgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcg 358  Q
    |||||||||||||| ||||||||||||   ||| || |||| || ||||| ||||||||||||||||||||| |||| ||||||||||    
T  44558561 tgctcgaaagagcttttatgcttgctgctgtgttcacggagctgctggcacttggattttgatactgtgttgccggttgatccattcg 44558474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 7903391 - 7903530
Alignment:
Q  26 tggtcgaagacttttggccttttt-tgacgtcgttttgttttataaacctgaaagggtatggttctgttaacctggaagggtctagttactaacgtattg 124  Q
    |||| ||||||||||||||| ||| ||| || |||| |||| | |||| ||||| | |||||||||||||||| | |||||| |  ||||||||||||||    
T  7903391 tggttgaagacttttggcctctttatgatgtggtttggtttcaaaaacttgaaaagatatggttctgttaacccgaaagggtttgattactaacgtattg 7903490  T
Q  125 gactcatcccataatctgagttcttacgcgtatgtttgaa 164  Q
    |  |||| ||   || ||||||||||||| ||||||||||    
T  7903491 gggtcattcctcgatttgagttcttacgcatatgtttgaa 7903530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 460
Target Start/End: Complemental strand, 48822678 - 48822625
Alignment:
Q  407 ttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgat 460  Q
    |||||||||||||||||||| |  |||||||||| |||||||||||||||||||    
T  48822678 ttttgtaacttggtttcgcgtctgtacgcgagtttgctgggttgcgtccgtgat 48822625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 452
Target Start/End: Complemental strand, 9192279 - 9192227
Alignment:
Q  400 tcatattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcg 452  Q
    |||| ||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  9192279 tcatcttttttgtaacctggtttcgcgcccgtacgcgagttcgctaggttgcg 9192227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 404 - 451
Target Start/End: Complemental strand, 3369447 - 3369400
Alignment:
Q  404 attttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgc 451  Q
    |||||||||||||||||||||||||| |||||| ||||||| ||||||    
T  3369447 attttttgtaacttggtttcgcgcccgtacgcgggttcgctaggttgc 3369400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 358
Target Start/End: Complemental strand, 17766080 - 17765996
Alignment:
Q  272 gctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcg 358  Q
    ||||||||||||| |||||||||||| ||| | | ||||| |||||||| |||||||||||||||  | ||||||| ||||||||||    
T  17766080 gctcgaaagagcttttatgcttgctg-cttattctgggagctgttggcacttggattttgatact-agctggcggtagatccattcg 17765996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 358
Target Start/End: Complemental strand, 19067400 - 19067316
Alignment:
Q  272 gctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcg 358  Q
    ||||||||||||| |||||||||||| ||| | | ||||| |||||||| |||||||||||||||  | ||||||| ||||||||||    
T  19067400 gctcgaaagagcttttatgcttgctg-cttattctgggagctgttggcacttggattttgatact-agctggcggtagatccattcg 19067316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 305 - 499
Target Start/End: Complemental strand, 47005801 - 47005607
Alignment:
Q  305 cagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttat-tgaaataggttaacttctcat 403  Q
    ||||||| |||||||| |||||||  ||||| | |||| |||| |||||||||| | |  ||| ||||||| |||| | || ||||  || |||| ||||    
T  47005801 cagggagctgttggcacttggattcggataccgcgttgacggtcgatccattcgccctggttacactctaattgttctctgcaata--ttcacttttcat 47005704  T
Q  404 attttttgt-aacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagtggattcact 499  Q
     |||||| | ||||||||||||||| | |||||| ||||||| ||||||||  ||||||| | ||  || |||| ||||||||||||| ||| ||||    
T  47005703 cttttttttgaacttggtttcgcgctcgtacgcgggttcgctaggttgcgtatgtgattagtgaattttggttaggatagattagagtagatccact 47005607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 557578 - 557662
Alignment:
Q  272 gctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccatt 356  Q
    ||||||||||||| |||| | || ||| |||| ||||| |||||||| |  ||||| ||||||| ||||||||||| ||||||||    
T  557578 gctcgaaagagctattatacctgatgttttgttcagggggttgttggtacgtggatcttgataccgtgttggcggtcgatccatt 557662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 462
Target Start/End: Complemental strand, 5450306 - 5450246
Alignment:
Q  402 atattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgatta 462  Q
    ||||||||||||| ||||||| |||||| |||||  | || ||||||||||||||||||||    
T  5450306 atattttttgtaatttggttttgcgcccgtacgcaggctcactgggttgcgtccgtgatta 5450246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 400 - 452
Target Start/End: Complemental strand, 20709051 - 20708999
Alignment:
Q  400 tcatattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcg 452  Q
    ||||||||||||||||||| ||||| |||| |||||| ||||||| |||||||    
T  20709051 tcatattttttgtaacttgatttcgtgcccgtacgcgggttcgctaggttgcg 20708999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 357
Target Start/End: Complemental strand, 43335354 - 43335267
Alignment:
Q  270 atgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattc 357  Q
    ||||||||||||||| |||| |||| ||  |||  |||||||||||||| |  ||||||||||| ||| ||||||||| | |||||||    
T  43335354 atgctcgaaagagcttttatacttgttgctttggtcagggagttgttggtacgtggattttgattctgagttggcggttggtccattc 43335267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 47005893 - 47005839
Alignment:
Q  101 aagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgt 155  Q
    |||||||| |||||| ||||||||||||||||||   |||| |||||||||||||    
T  47005893 aagggtctggttactgacgtattggactcatccctcgatcttagttcttacgcgt 47005839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 3153897 - 3153974
Alignment:
Q  87 ttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaa 164  Q
    ||||||||||||| ||| |||| |||||||||||||| ||||||| |  | |||| ||||||||| ||| || |||||    
T  3153897 ttctgttaacctgaaagagtctggttactaacgtatttgactcattctttgatctaagttcttacacgtttgattgaa 3153974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 69 - 347
Target Start/End: Original strand, 39228862 - 39229139
Alignment:
Q  69 aaacctgaaagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttc 168  Q
    |||||||||||| |||||||||||||||| | |||| ||| |||||||||||||| ||||||||||   |||||||||||||||||| ||| ||||  |     
T  39228862 aaacctgaaaggctatggttctgttaacccgaaaggttctggttactaacgtattcgactcatccctcgatctgagttcttacgcgtctgtctgaaactg 39228961  T
Q  169 gttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatattt 268  Q
     ||||||||||| | |||||| |||  | |||||||||||| ||| ||||||||| | ||||| |||||||||||||||| |  |||||    | || ||    
T  39228962 cttgtgtttggtggtttgacttcttcgaatctctgatgttttcagatctgttgagatttgcagttttcaagtcgtcttgtctgcctacatgccggtactt 39229061  T
Q  269 gatgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggt 347  Q
     ||||||||||||| | ||||||||||||  |||| ||| |||||||||||  | |||| |||||| ||||||||||||    
T  39229062 catgctcgaaagag-ttttatgcttgctgctttgttcagagagttgttggccctcggatcttgatattgtgttggcggt 39229139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 101 - 330
Target Start/End: Complemental strand, 12419591 - 12419362
Alignment:
Q  101 aagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgactgctttaactct 200  Q
    |||||| | |||||||||||||||||||||||||   |||||||||||||||||||||||||||     ||||||||||| ||||||||| ||| |||||    
T  12419591 aagggtttggttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtggcttgactgtttttactct 12419492  T
Q  201 ctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcgaaagagctgttatgcttgctgtct 300  Q
    || || ||  ||| | ||||||| |||| || |||||||||||||||||   ||||||| |   | ||  |||||||||||||| |||||||||||| ||    
T  12419491 ctaattttctcagatttgttgagatctgtaggtttcaagtcgtcttgtacgcctacactttagaacttagtgctcgaaagagcttttatgcttgctg-ct 12419393  T
Q  301 tg-tgcagggagttgttggcagttggatttt 330  Q
    || | ||||||| || ||||| |||||||||    
T  12419392 tgattcagggagctgatggcacttggatttt 12419362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 101 - 330
Target Start/End: Complemental strand, 12431651 - 12431422
Alignment:
Q  101 aagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgactgctttaactct 200  Q
    |||||| | |||||||||||||||||||||||||   |||||||||||||||||||||||||||     ||||||||||| ||||||||| ||| |||||    
T  12431651 aagggtttggttactaacgtattggactcatccctagatctgagttcttacgcgtatgtttgaaacctattgtgtttggtggcttgactgtttttactct 12431552  T
Q  201 ctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcgaaagagctgttatgcttgctgtct 300  Q
    || || ||  ||| | ||||||| |||| || |||||||||||||||||   ||||||| |   | ||  |||||||||||||| |||||||||||| ||    
T  12431551 ctaattttctcagatttgttgagatctgtaggtttcaagtcgtcttgtacgcctacactttagaacttagtgctcgaaagagcttttatgcttgctg-ct 12431453  T
Q  301 tg-tgcagggagttgttggcagttggatttt 330  Q
    || | ||||||| || ||||| |||||||||    
T  12431452 tgattcagggagctgatggcacttggatttt 12431422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 110 - 423
Target Start/End: Original strand, 4724348 - 4724660
Alignment:
Q  110 gttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgactgctttaactctctgatgttt 209  Q
    ||||||||||||||||| ||||||| | ||||| ||||||||| ||||| || ||    |||||||  ||| || ||||| |||  ||||||||||||||    
T  4724348 gttactaacgtattggaatcatcccttgatctgggttcttacgtgtatgcttaaaacctgttgtgta-ggtggcctgactacttcgactctctgatgttt 4724446  T
Q  210 ccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcgaaagagctgttatgcttgctgtcttgtgcaggg 309  Q
      || | ||||||| || |||  |||||||| ||||||| |  ||||||||||||| || ||||||||||||||| ||||||||||||  |||  || ||    
T  4724447 ttagatttgttgagatcggcaagtttcaagttgtcttgtttacctacactatgatacttaatgctcgaaagagcttttatgcttgctgctttgatcatgg 4724546  T
Q  310 agttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaactgttattgaaataggttaacttctcatattttt 409  Q
    | |||||| || ||| | |||| ||||| ||| |||||  ||||||||||||   ||||||  ||| |||| |||  | | ||| || ||||||||||||    
T  4724547 aattgttgacacttgaactttgttactgagttagcggtcaatccattcgtcgaacttaaaccttaattgttcttggcagatgtttacctctcatattttt 4724646  T
Q  410 tgtaacttggtttc 423  Q
    ||||||||||||||    
T  4724647 tgtaacttggtttc 4724660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 76 - 424
Target Start/End: Complemental strand, 14695186 - 14694837
Alignment:
Q  76 aaagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgt 175  Q
    ||||||| | |||||||||||  | |||||||||||||||||||||||||||| ||| |   |||| |||||||||| |||||| ||||    ||| |||    
T  14695186 aaagggtctcgttctgttaactcgaaagggtctagttactaacgtattggacttatcactcgatctaagttcttacgagtatgtatgaaacatgttctgt 14695087  T
Q  176 ttggttgcttgactgctttaactctctgatgtttccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctc 275  Q
    ||||| || ||||| ||| ||||   |||| |||||| || ||||||  | || ||||||||||  ||||||| |  ||||||| || || || ||||||    
T  14695086 ttggtggcctgacttcttcaacttagtgatatttccatgtatgttgatatatgtagatttcaaggtgtcttgtctacctacactctggtaattcatgctc 14694987  T
Q  276 gaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaactctaa 375  Q
    ||||||||| ||||||||| ||  |||| || |||| || ||||| ||| ||||||||||  |||| ||||| |||||||||| ||   |||||| ||||    
T  14694986 gaaagagcttttatgcttgttgctttgttcatggagctgatggcacttgaattttgataccatgtttgcggtcgatccattcgccgaaattaaaccctaa 14694887  T
Q  376 ctgttattgaaataggttaacttctcata-ttttttgtaacttggtttcg 424  Q
     | || || ||| | |||| ||| ||||| ||||||||||| ||||||||    
T  14694886 ttattcttcaaagatgttagcttgtcatatttttttgtaacctggtttcg 14694837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 110 - 358
Target Start/End: Original strand, 4730704 - 4730948
Alignment:
Q  110 gttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgactgctttaactctctgatgttt 209  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||||  | ||| |  | |||||||||||| || ||   |||| | |||||||||| ||    
T  4730704 gttactaacgtattggactcatcccacgatctgagttctaacgcgtcagattgtaacttgttgtgtttggtggcatgtacgcttga-ctctctgatgatt 4730802  T
Q  210 ccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcgaaagagctgttatgcttgctgtcttgtgcaggg 309  Q
    |||| | ||||||| ||||||| ||||||| |  |||||     |||||| || |   |  |||||||||||||| | |||||||||| |||||||||||    
T  4730803 ccagatttgttgagatctgcaggtttcaaggcaacttgttcgcttacactctggttcctcgtgctcgaaagagct-taatgcttgctg-cttgtgcaggg 4730900  T
Q  310 agttgttggcagttggattttgatactgtgttggcggtggatccattcg 358  Q
    |||||| |||| ||||| |||| ||| |||||||||||  |||||||||    
T  4730901 agttgtcggcacttgga-tttgttacggtgttggcggtcaatccattcg 4730948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 271 - 380
Target Start/End: Complemental strand, 18481999 - 18481892
Alignment:
Q  271 tgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaac 370  Q
    |||||||||||||| ||| |||||||| |||||  ||||||||||||||| |||||||  | ||| ||||||||||| |||||||||| | ||||||||     
T  18481999 tgctcgaaagagcttttacgcttgctg-cttgtttagggagttgttggcacttggattc-gttaccgtgttggcggtcgatccattcgccatttttaaat 18481902  T
Q  371 tctaactgtt 380  Q
     |||||||||    
T  18481901 cctaactgtt 18481892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 405 - 462
Target Start/End: Original strand, 38002210 - 38002267
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgatta 462  Q
    ||||||||||||||||||||||||| |||||| ||| ||||||||||| | |||||||    
T  38002210 ttttttgtaacttggtttcgcgcccgtacgcgggtttgctgggttgcgcctgtgatta 38002267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 406 - 490
Target Start/End: Complemental strand, 8216632 - 8216548
Alignment:
Q  406 tttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagt 490  Q
    |||||||||||||||||| ||||| |||||| ||||| ||||||||||| |||| || |  |  ||||||| |||||||||||||    
T  8216632 tttttgtaacttggtttcacgcccgtacgcgggttcgttgggttgcgtcagtgactagtgtatttttgttaggatagattagagt 8216548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 5136197 - 5136318
Alignment:
Q  115 taacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgactgctttaactctctgatgtttccagg 214  Q
    ||||||||||||||||||||   |||||||||||||||||| |||| |||   |||||| |||||| |  |   | |||| | |||||||||||||||||    
T  5136197 taacgtattggactcatccctcgatctgagttcttacgcgtctgttggaa-accgttgtatttggtgg--tctatcctttgattctctgatgtttccagg 5136293  T
Q  215 tctgttgaggtctgcagatttcaag 239  Q
     |||||||| ||||||| |||||||    
T  5136294 actgttgagttctgcaggtttcaag 5136318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 405 - 490
Target Start/End: Original strand, 19182355 - 19182440
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattagagt 490  Q
    ||||||||||||||||||||| ||| |||||| ||| |||| |||||  |  |||||||||||  ||||||| ||||||| |||||    
T  19182355 ttttttgtaacttggtttcgcacccgtacgcgggtttgctgagttgcacctatgattaattaatttttgttaagatagataagagt 19182440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 405 - 453
Target Start/End: Original strand, 15544645 - 15544693
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgt 453  Q
    |||||||||||||||||||| |||| |||||| | ||||||||||||||    
T  15544645 ttttttgtaacttggtttcgggcccctacgcgggctcgctgggttgcgt 15544693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 286 - 358
Target Start/End: Complemental strand, 39711568 - 39711496
Alignment:
Q  286 ttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcg 358  Q
    ||||||||||||  |||| ||| ||| |||||||| |||||||||| ||| |||||||||||  |||||||||    
T  39711568 ttatgcttgctgctttgttcagagagctgttggcacttggattttgttaccgtgttggcggtctatccattcg 39711496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 488
Target Start/End: Original strand, 464002 - 464081
Alignment:
Q  409 ttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgattaattaaactttgttatgatagattaga 488  Q
    ||||||||||||| ||||||| |||||| |||||| ||||||||  |||||||| |  |  ||||||| |||||||||||    
T  464002 ttgtaacttggttccgcgcccgtacgcgggttcgccgggttgcgctcgtgattactatatttttgttaggatagattaga 464081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 9848108 - 9848159
Alignment:
Q  104 ggtctagttactaacgtattggactcatcccataatctgagttcttacgcgt 155  Q
    ||||| |||||| ||||||||||||||||||   ||||||||||||||||||    
T  9848108 ggtctggttactgacgtattggactcatccctcgatctgagttcttacgcgt 9848159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 452
Target Start/End: Original strand, 35658371 - 35658418
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcg 452  Q
    |||||||||||||||||||||| || |||||| ||||||| |||||||    
T  35658371 ttttttgtaacttggtttcgcgtccgtacgcgggttcgctaggttgcg 35658418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 462
Target Start/End: Complemental strand, 39711460 - 39711394
Alignment:
Q  395 acttctcatattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgatta 462  Q
    ||||||||||||||| ||||| | ||||||| ||| |||||| ||||||||||||||| |||| ||||    
T  39711460 acttctcatattttt-gtaacctcgtttcgcacccgtacgcgggttcgctgggttgcgcccgtaatta 39711394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 35243181 - 35243235
Alignment:
Q  169 gttgtgtttggttgcttgactgctttaactctctgatgtttccaggtctgttgag 223  Q
    |||||||||||| || || ||||||  |||||||||||||||||| |||||||||    
T  35243181 gttgtgtttggtggcatgtctgcttggactctctgatgtttccagatctgttgag 35243235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 38002026 - 38002067
Alignment:
Q  111 ttactaacgtattggactcatcccataatctgagttcttacg 152  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  38002026 ttactaacgtattggactcatccctcgatctgagttcttacg 38002067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 9848191 - 9848251
Alignment:
Q  300 ttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtc 360  Q
    |||| |||||||||||||||| |||||| ||| | | ||||||||| | ||||||||||||    
T  9848191 ttgttcagggagttgttggcacttggatgttgttgccgtgttggcgatcgatccattcgtc 9848251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 110 - 358
Target Start/End: Original strand, 30584 - 30828
Alignment:
Q  110 gttactaacgtattggactcatcccataatctgagttcttacgcgtatgtttgaatttcgttgtgtttggttgcttgactgctttaactctctgatgttt 209  Q
    ||||||||||||||||||||||||||  || |||||||| ||||||  | ||| |  | ||||||||||||||| ||   |||| | |||||||||| ||    
T  30584 gttactaacgtattggactcatcccacgatatgagttctaacgcgtcagattgtaacttgttgtgtttggttgcgtgcaggcttga-ctctctgatgatt 30682  T
Q  210 ccaggtctgttgaggtctgcagatttcaagtcgtcttgtatttctacactatgatatttgatgctcgaaagagctgttatgcttgctgtcttgtgcaggg 309  Q
    |||| ||||||||| |||||||  |||||| |  |||||     |||||| || |   |  |||||||||||||| |||||||||||| |||||||||||    
T  30683 ccagatctgttgagatctgcaggcttcaaggcaacttgtccgcttacactttggttcctcgtgctcgaaagagct-ttatgcttgctg-cttgtgcaggg 30780  T
Q  310 agttgttggcagttggattttgatactgtgttggcggtggatccattcg 358  Q
    ||||||||||| ||||| |||| ||| |||||| ||||  |||||||||    
T  30781 agttgttggcacttgga-tttgttaccgtgttgacggtcaatccattcg 30828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 353321 - 353236
Alignment:
Q  70 aacctgaaagggtatggttctgttaacctggaagggtctagttactaacgtattggactcatcccataatctgagttcttacgcgt 155  Q
    |||| |||||||| |||| ||||||||  | |||||||| |||||| || |||||||||||||||   ||||||||||||||||||    
T  353321 aacccgaaagggtctggtcctgttaactcgaaagggtctggttactgacatattggactcatccctcgatctgagttcttacgcgt 353236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 270 - 451
Target Start/End: Complemental strand, 353233 - 353052
Alignment:
Q  270 atgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcgtcgtttttaaa 369  Q
    |||||||||||||||  |||||||||||   | | ||| |||  ||||||| |||||||||| |||  |||| |||||  ||||||||| | ||| || |    
T  353233 atgctcgaaagagcttgtatgcttgctggtgtattcagagagcggttggcacttggattttgttaccatgttagcggtcaatccattcgccatttctata 353134  T
Q  370 ctctaactgttatt--gaaataggttaacttctcatattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgc 451  Q
    |  |||||||| ||  | ||||  || |||| |||||||||||||||||||||||||||| | || | | ||||||||||||||    
T  353133 ccttaactgttcttttgcaata--ttcacttttcatattttttgtaacttggtttcgcgctcctatgtgggttcgctgggttgc 353052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 405 - 462
Target Start/End: Complemental strand, 9372 - 9315
Alignment:
Q  405 ttttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgatta 462  Q
    ||||||||||||||||||||| ||| |||||| ||||||| ||||||| | |||||||    
T  9372 ttttttgtaacttggtttcgcacccgtacgcgggttcgctaggttgcgcctgtgatta 9315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 358
Target Start/End: Original strand, 10393 - 10481
Alignment:
Q  270 atgctcgaaagagctgttatgcttgctgtcttgtgcagggagttgttggcagttggattttgatactgtgttggcggtggatccattcg 358  Q
    |||||| ||||||||  ||||| |||||  |||| ||||| |||| ||| |  ||||| |||| |||||||||||||||||||||||||    
T  10393 atgctcaaaagagcttctatgcctgctgctttgttcagggggttgctggtacgtggatcttgaaactgtgttggcggtggatccattcg 10481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 400 - 460
Target Start/End: Original strand, 31261 - 31321
Alignment:
Q  400 tcatattttttgtaacttggtttcgcgcccatacgcgagttcgctgggttgcgtccgtgat 460  Q
    |||||||||||||||  ||||||||||||| || ||| ||||||| ||||||| |||||||    
T  31261 tcatattttttgtaatctggtttcgcgcccgtatgcgggttcgctaggttgcgcccgtgat 31321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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