View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6592_high_5 (Length: 321)
Name: NF6592_high_5
Description: NF6592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6592_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 11243745 - 11243438
Alignment:
| Q |
1 |
ttgatctaactgtcagtcatctctctgaaactatgttaaattattaatcaataatgagaagataatgaaactcactttttgtatactttattaatgaaat |
100 |
Q |
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| T |
11243745 |
ttgatctaactgtcagtcatctctctgaaact--gttaaattattaatcaataatgagaagataatgaaactcactttttgtatactttattaatgaaat |
11243648 |
T |
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| Q |
101 |
ttttctggcattttcaaaatccatacaattcaattcaaacacttccacattcttacatcacaactcaagtgccgtgtatgggttgatgaaagactaagat |
200 |
Q |
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| T |
11243647 |
ttttctggaattttcagaatccatacaattcaattcaaacacttccacattcttacatcacaactcaagtgccgtgtatgggttgatgaaagactaagat |
11243548 |
T |
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| Q |
201 |
gaaaaggagggtggaataggctccagttatccagttctgtgtatgattctcaattttctggtactaattcacttgcatgtgatcttttattgtactcttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
11243547 |
gaaaaggagggtggaataggctccagttatccagttctgtgtatgattctcaattttctaatactaattcacttgcatgtgattttttattgtactcttt |
11243448 |
T |
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| Q |
301 |
gtcgatgatg |
310 |
Q |
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|||||||||| |
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| T |
11243447 |
gtcgatgatg |
11243438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 11231649 - 11231593
Alignment:
| Q |
28 |
aaactatgttaaattattaatcaataatgagaagataatgaaactcactttttgtat |
84 |
Q |
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| T |
11231649 |
aaactatgttaaattattaatcaataatgagaagataatgaaactcaatttttgtat |
11231593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 310
Target Start/End: Complemental strand, 11231540 - 11231454
Alignment:
| Q |
225 |
agttatccagttctgtgtatgattctcaattttctggtactaattcacttgcatgtga-tcttttattgtactctttgtcgatgatg |
310 |
Q |
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| T |
11231540 |
agttatccatttctgtgtatgattctcaattttatgataatatttcacttgcatgttatttttttattgtactctttgtccatgatg |
11231454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 11231593 - 11231553
Alignment:
| Q |
113 |
ttcaaaatccatacaattcaattcaaacacttccacattct |
153 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||| |
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| T |
11231593 |
ttcagaatccatgcaattcaattcaaacacttccacattct |
11231553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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