View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6592_low_2 (Length: 421)
Name: NF6592_low_2
Description: NF6592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6592_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 414
Target Start/End: Complemental strand, 46407347 - 46406943
Alignment:
| Q |
10 |
catcatcagtaacagacattcgcttaagatgaaacttctcaagccatgggtatgcagcagcgaaagtagcgacccacggagagaagtgggccccccaatc |
109 |
Q |
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| T |
46407347 |
catcatcagtaacagacattcgcttaagatgaaacttctcaagccatgggtatgcagcagcgaaagtagtgacccacggagagaagtgggccccccaatc |
46407248 |
T |
|
| Q |
110 |
aaccggcatcatatcgaaatcagcgaaccgcggtttgcctttgatggtgacggaccggatgcggctgaaccgggatgtagcacggcggggggagacggag |
209 |
Q |
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| T |
46407247 |
aaccggcatcatatcgaaatcagcgaaccgcggtttgcctttgatggtgacggaccggatgcggctgaaccgggatgtagcacggcggggggagacggag |
46407148 |
T |
|
| Q |
210 |
tagcaatttccgatgaagaggtcggatctggtgagagcttccgagcggtaccatgatttgcagactaatgaggcggcgttacggtcgcggcaggaggtga |
309 |
Q |
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| T |
46407147 |
tagcaatttccgatgaagaggtcggatctggtgagagcttccgtgcggtaccatgatttgcagactaatgaggcggcgttacggtcgcggcgggaggtga |
46407048 |
T |
|
| Q |
310 |
ggaagtggaggacggtttcgaggacaatttcgaggacgtggtctgggttttccgattggaactccggcgaggggtagtttggggtttctgtattcatgat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46407047 |
ggaagtggaggacggtttcgaggacaatttcgaggacgtggtctgggttttccgattggaactccggcgaggggtagtttggggtttctgtattcatgat |
46406948 |
T |
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| Q |
410 |
gatgt |
414 |
Q |
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||||| |
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| T |
46406947 |
gatgt |
46406943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 142 - 246
Target Start/End: Complemental strand, 13512863 - 13512760
Alignment:
| Q |
142 |
gtttgcctttgatggtgacggaccggatgcggctgaaccgggatgtagcacggcggggggagacggagtagcaatttccgatgaagaggtcggatctggt |
241 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||| | || |||||||||| ||||||||||| |
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| T |
13512863 |
gtttgcctttgatggtgacggaccggatgcgattgaactgggatgtagcacag-tgggggagacggagtagcgaatttcgatgaagagttcggatctggt |
13512765 |
T |
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| Q |
242 |
gagag |
246 |
Q |
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||||| |
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| T |
13512764 |
gagag |
13512760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 295
Target Start/End: Complemental strand, 27537843 - 27537641
Alignment:
| Q |
93 |
aagtgggccccccaatcaaccggcatcatatcgaaatcagcgaaccgcggtttgcctttgatggtgacggaccggatgcggctgaaccgggatgtagcac |
192 |
Q |
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|||||||||||||||||||| ||||||| ||||||||| || |||| ||| || || || | || || || |||||||||||| || | || | |
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| T |
27537843 |
aagtgggccccccaatcaacaggcatcagatcgaaatccgcaaacctcggcttacccttaacagtaaccgatttgatgcggctgaaacgagcgacggcgc |
27537744 |
T |
|
| Q |
193 |
ggcggggggagacggagtagcaatttccgatgaagaggtcggatctggtgagagcttccgagcggtaccatgatttgcagactaatgaggcggcgttacg |
292 |
Q |
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| || ||||||| | |||||| |||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||| |||||||||| ||| || |
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| T |
27537743 |
gtcgtggggagagtgcgtagcagtttccgatgaagaggtcggatcgtgtgagggcttccgcacggtaccatgaacgacagaccaatgaggcggagtttcg |
27537644 |
T |
|
| Q |
293 |
gtc |
295 |
Q |
| |
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||| |
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|
| T |
27537643 |
gtc |
27537641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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