View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6592_low_4 (Length: 371)

Name: NF6592_low_4
Description: NF6592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6592_low_4
NF6592_low_4
[»] chr6 (3 HSPs)
chr6 (1-354)||(27862296-27862648)
chr6 (62-222)||(13104653-13104813)
chr6 (74-200)||(32895707-32895833)
[»] chr2 (3 HSPs)
chr2 (1-279)||(10977366-10977644)
chr2 (1-200)||(28590176-28590375)
chr2 (1-140)||(41316089-41316228)
[»] chr8 (4 HSPs)
chr8 (1-176)||(33324422-33324596)
chr8 (1-200)||(26951664-26951863)
chr8 (41-200)||(21276651-21276810)
chr8 (1-200)||(18178811-18179009)
[»] chr1 (6 HSPs)
chr1 (2-199)||(17321564-17321761)
chr1 (22-200)||(27877389-27877567)
chr1 (2-195)||(12538790-12538983)
chr1 (56-194)||(10395636-10395776)
chr1 (273-354)||(15234696-15234777)
chr1 (111-196)||(39287359-39287444)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-200)||(255589-255788)
[»] chr4 (4 HSPs)
chr4 (1-200)||(23059565-23059764)
chr4 (1-97)||(37857156-37857246)
chr4 (14-160)||(35096687-35096833)
chr4 (146-200)||(9631992-9632046)
[»] chr7 (3 HSPs)
chr7 (4-205)||(12129192-12129393)
chr7 (118-216)||(10325407-10325505)
chr7 (9-99)||(9451248-9451339)
[»] chr3 (4 HSPs)
chr3 (1-198)||(10346707-10346904)
chr3 (1-200)||(47703959-47704158)
chr3 (56-200)||(26731150-26731294)
chr3 (1-192)||(1017850-1018041)
[»] scaffold0151 (1 HSPs)
scaffold0151 (1-196)||(21514-21709)
[»] chr5 (5 HSPs)
chr5 (14-199)||(24870119-24870304)
chr5 (1-200)||(24274930-24275129)
chr5 (1-200)||(24387084-24387283)
chr5 (1-176)||(30304533-30304708)
chr5 (105-200)||(8703810-8703905)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 27862296 - 27862648
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcc 100  Q
    |||||||||||| |||||||||||||| |||| ||||||||| |||||  ||||||||||||||||||| ||||||||||||||| |||||||||||||     
T  27862296 atcaaattgttgattagagatccaatctaaggctgtatgcaagccaacaacctctcccacctctacatcgcaaagaggggcaaactattccgttcttgca 27862395  T
Q  101 agaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 200  Q
    |||||||||| |||| |||||||  || ||||||| |||||||||||| || |||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  27862396 agaacaaatgtaccaccatcatcccta-ggcacatacccagtccaaccatgctaagagaagtggaaaaagatgcatcaatgttgcatttatacctgccag 27862494  T
Q  201 ttgtcaacttcttccaacaatcctcttctatacttgtgttgcgcacttgtggtgtggtattgtagttgttattgcgagacctgatgtcttgggctgctct 300  Q
      | |||||||||||||| ||| ||||||| ||||||| ||||||| |||||| ||||||| | ||||||  ||||||| || |||||||||||||||||    
T  27862495 gcgccaacttcttccaacgatcttcttctagacttgtggtgcgcacatgtggtatggtattttggttgttgctgcgagatctaatgtcttgggctgctct 27862594  T
Q  301 ccattcttctagtaagtgagttgcacgttgaaaaacctgcacattagttccatt 354  Q
    ||||||||||||||| ||||||||||||||||| || |||||||||||| ||||    
T  27862595 ccattcttctagtaaatgagttgcacgttgaaacacatgcacattagtttcatt 27862648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 13104653 - 13104813
Alignment:
Q  62 tctacatcacaaagaggggcaaaccattccgttcttgccagaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaag 161  Q
    |||| |||||||||| ||| ||| ||||  |||||||| |||||||| ||||||||||| ||  |||  ||||||||||  |||||| ||||||||||||    
T  13104653 tctatatcacaaagacgggtaaatcattatgttcttgcaagaacaaaagcaccatcatcttccgtaatacacatgcccaaaccaaccttgttaagagaag 13104752  T
Q  162 tagaaaaggatgcattaatgttgcatttatacctgccagttgtcaacttcttccaacaatc 222  Q
    |  |||||||||||| |||||||||||||||||||| || || |   ||||||||||||||    
T  13104753 tgaaaaaggatgcatcaatgttgcatttatacctgctaggtgccggtttcttccaacaatc 13104813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 32895833 - 32895707
Alignment:
Q  74 agaggggcaaaccattccgttcttgccagaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatg 173  Q
    |||||| |||||||||  ||| |||| || ||||| |||||||| |||||  |||| ||||||||||  ||||| |||||||||||||| ||||||||||    
T  32895833 agagggacaaaccattatgttattgcaagcacaaaagcaccatcctcatccctaagacacatgcccaagccaactctgttaagagaagttgaaaaggatg 32895734  T
Q  174 cattaatgttgcatttatacctgccag 200  Q
    ||| ||| |||||||| || |||||||    
T  32895733 catcaatattgcatttgtaactgccag 32895707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 10977644 - 10977366
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcc 100  Q
    |||||||||||| ||||||||||||||||||||||||| | | ||||||||||||||||| ||||||||||||||||||| |||||||   ||||||||     
T  10977644 atcaaattgttgattagagatccaatccaaggttgtatactatccaaccgcctctcccacatctacatcacaaagaggggaaaaccatcatgttcttgca 10977545  T
Q  101 agaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 200  Q
    |||||||| ||||||||||||||  |||| ||||| || ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  10977544 agaacaaacgcaccatcatcatccctaagacacataccgagtccaaccctgttaagagaagtggaaaatgatgcatcaatgttgcatttatacctgccag 10977445  T
Q  201 ttgtcaacttcttccaacaatcctcttctatacttgtgttgcgcacttgtggtgtggtattgtagttgttattgcgaga 279  Q
     || |  ||||||||||| ||| |||||||  |||||| || |||  |||||||||| ||| | |||||| ||||||||    
T  10977444 atgccggcttcttccaacgatcttcttctagtcttgtggtgtgcatctgtggtgtgggattttggttgttgttgcgaga 10977366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 28590176 - 28590375
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcc 100  Q
    |||||||||||| ||||||| ||||||||| || || || |  ||||| || || ||| | |||| |||||||| | ||||||||||||  ||||||||     
T  28590176 atcaaattgttgattagagagccaatccaaagtcgtgtgtagtccaacagcttcccccgcatctatatcacaaatatgggcaaaccattttgttcttgca 28590275  T
Q  101 agaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 200  Q
    || ||||| ||||||||||||||  |||| ||||||||||  ||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  28590276 agtacaaaagcaccatcatcatccctaagacacatgcccaacccaaccctgttaagagaagtagagaaggatgcatctatgttgcatttatacctgccag 28590375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 41316089 - 41316228
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcc 100  Q
    |||||||||||| ||||||| ||||||||| |  || || |  ||||| || || ||||| |||| |||||||| ||||||||||||||| ||||||||     
T  41316089 atcaaattgttgattagagagccaatccaaagccgtgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgca 41316188  T
Q  101 agaacaaatgcaccatcatcatctttaaggcacatgccca 140  Q
    || ||||| ||||||||||||||  |||| ||||||||||    
T  41316189 agtacaaaagcaccatcatcatccctaagacacatgccca 41316228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 33324596 - 33324422
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcc 100  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||     
T  33324596 atcaaattgttgattagagatccaatccaaggttgtatgcaatccaaccgcctctcccacctctacatcacaaaga-gggtaaaccattccgttcttgca 33324498  T
Q  101 agaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcat 176  Q
    |||||||||||||||||||||||  |||| ||||| || ||||||||||||||| ||||||| |||||||||||||    
T  33324497 agaacaaatgcaccatcatcatccctaagacacataccgagtccaaccctgttatgagaagtggaaaaggatgcat 33324422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 26951664 - 26951863
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcc 100  Q
    |||||||||||| ||||||| ||||||||| ||||| || |  ||||| || || |||||||||| |||||||| ||||||||||||||| ||||||||     
T  26951664 atcaaattgttgattagagagccaatccaaagttgtgtgtagtccaacagcttcccccacctctatatcacaaataggggcaaaccattctgttcttgca 26951763  T
Q  101 agaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 200  Q
    || ||||| ||||||||||||||  |||| ||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26951764 agtacaaaagcaccatcatcatccctaagacacatgcccaacccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccag 26951863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 41 - 200
Target Start/End: Original strand, 21276651 - 21276810
Alignment:
Q  41 aaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgccagaacaaatgcaccatcatcatctttaaggcacatgccca 140  Q
    ||||||||  |||| ||||| |||| ||||||||||||| |||||||||| |||||||| ||||||||  ||||||| |||||  ||||  |||||||||    
T  21276651 aaaccaacaacctcccccacatctatatcacaaagagggtcaaaccattctgttcttgcaagaacaaaaccaccatcctcatccctaagatacatgccca 21276750  T
Q  141 gtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 200  Q
      ||||||| |||||||||||| ||||||||||||| ||| |||||||| ||||||||||    
T  21276751 agccaacccagttaagagaagtggaaaaggatgcatcaatattgcatttgtacctgccag 21276810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 18179009 - 18178811
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcc 100  Q
    |||||| ||||| ||||||| ||||||||| | | | ||||  ||||| ||||| ||||| |||| ||||||||| || ||||||||||  ||||||||     
T  18179009 atcaaactgttgattagagagccaatccaaagctttgtgcagtccaacagcctc-cccacatctatatcacaaagtggagcaaaccattttgttcttgca 18178911  T
Q  101 agaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 200  Q
    |||||||| ||||||||| ||||  |||| |||||||| |  ||||||||||||||| |||| ||||||||||||| ||| |||||||| ||||| ||||    
T  18178910 agaacaaaagcaccatcaacatccctaagacacatgcctaaaccaaccctgttaagaaaagtggaaaaggatgcatcaatattgcatttgtaccttccag 18178811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 17321761 - 17321564
Alignment:
Q  2 tcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcca 101  Q
    ||||| ||||| ||||||||||||||||| ||||| || || |||||  ||||||| || |||| |||||||||||||||||||||||  |||||||  |    
T  17321761 tcaaactgttgattagagatccaatccaaagttgtgtgtaatccaacgacctctcctacatctatatcacaaagaggggcaaaccattttgttcttgtaa 17321662  T
Q  102 gaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgcca 199  Q
    ||||||| ||||||||||||||  |||| ||||||||||| |||||||| ||||||||||  ||||| ||||||| ||||||||||||||||||||||    
T  17321661 gaacaaaagcaccatcatcatccctaagacacatgcccagaccaaccctattaagagaagcggaaaatgatgcatcaatgttgcatttatacctgcca 17321564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 27877567 - 27877389
Alignment:
Q  22 ccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgccagaacaaatgcaccatcatca 121  Q
    ||||||||| | ||| || | |||||| ||||| ||||| |||| |||||||||||||||||||||||| |||||||| || ||||| ||| |||| |||    
T  27877567 ccaatccaaagatgtgtgtagaccaacagcctcccccacatctatatcacaaagaggggcaaaccattctgttcttgcaagcacaaaagcatcatcctca 27877468  T
Q  122 tctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 200  Q
    ||  |||| ||||||||||  |||||  |||||| |||||| ||||||||||||| ||| |||||||| || |||||||    
T  27877467 tccctaagacacatgcccaagccaactatgttaaaagaagttgaaaaggatgcatcaatattgcatttgtatctgccag 27877389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 12538983 - 12538790
Alignment:
Q  2 tcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcca 101  Q
    ||||| ||||| || || |||||||| |  ||||| ||||||||| | ||||| ||||| |||| ||  |||||||| |||||| ||| ||||||| | |    
T  12538983 tcaaactgttgattggaaatccaatcaatagttgtgtgcaaaccagcagcctcccccacgtctatattgcaaagaggagcaaacaatttcgttcttacaa 12538884  T
Q  102 gaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacct 195  Q
    ||||||| |||| ||| |||||  |||||||||||||||| ||||||| |||||||||||  ||||| ||||||| | ||||||||||||||||    
T  12538883 gaacaaaagcacaatcgtcatccctaaggcacatgcccagaccaacccagttaagagaagaggaaaatgatgcatcagtgttgcatttatacct 12538790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 10395636 - 10395776
Alignment:
Q  56 cccacctctacatcacaaagaggggcaaaccattccgttcttgccagaacaaatgcaccatcatcatctttaaggcacatgccc--agtccaaccctgtt 153  Q
    ||||| |||| ||||||||||||||||||| |||  |||||| | |||||||| ||||||||||||||  |||| |||||||||  ||   |||||||||    
T  10395636 cccacatctatatcacaaagaggggcaaactattttgttcttacaagaacaaaagcaccatcatcatccctaagacacatgcccaaagcaaaaccctgtt 10395735  T
Q  154 aagagaagtagaaaaggatgcattaatgttgcatttatacc 194  Q
    ||||||||| |||||||| |||| |||||||||||||||||    
T  10395736 aagagaagtggaaaaggaagcatcaatgttgcatttatacc 10395776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 273 - 354
Target Start/End: Complemental strand, 15234777 - 15234696
Alignment:
Q  273 tgcgagacctgatgtcttgggctgctctccattcttctagtaagtgagttgcacgttgaaaaacctgcacattagttccatt 354  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| ||||    
T  15234777 tgcgagacctaatgtcttgggctgccctccattcttctagtaagtgagttgcacgttgaaacacatgcacattagtttcatt 15234696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 39287444 - 39287359
Alignment:
Q  111 caccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctg 196  Q
    |||||||||||| |  ||| ||||| ||||  |||||||| |||||||| || ||||||||||||| ||| || ||||| ||||||    
T  39287444 caccatcatcatttccaagacacattcccaaaccaaccctattaagagaggtggaaaaggatgcataaattttacatttgtacctg 39287359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 255589 - 255788
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcc 100  Q
    |||||||||||| ||||||| ||||||||| |  || || |  ||||| || || ||||| |||| |||||||| |||||||||||||| |||||||||     
T  255589 atcaaattgttgattagagagccaatccaaagccgtgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattacgttcttgca 255688  T
Q  101 agaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 200  Q
    || ||||| ||||||||||||||  |||| ||||||||||  ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  255689 agtacaaaagcaccatcatcatccctaagacacatgcccaaaccaaccctgttaaaagaagtagaaaaggatgcatcaatgttgcatttatacctgccag 255788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 23059565 - 23059764
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcc 100  Q
    |||||||||||| ||||||| ||||||||| |  || || |  ||||| || || ||||| |||| |||||||| ||||||||||||||| ||||||||     
T  23059565 atcaaattgttgattagagagccaatccaaagccgtgtgtagcccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgca 23059664  T
Q  101 agaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 200  Q
    || ||||| ||||||||||||||  |||| ||||||||||  |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23059665 agtacaaaagcaccatcatcatccctaagacacatgcccaacccaaccttgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccag 23059764  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 37857156 - 37857246
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttctt 97  Q
    |||||||||||| ||||||||||||||||| | || ||||||||||||||||      |||||||| ||||||||||||||||||||||||||||||    
T  37857156 atcaaattgttgattagagatccaatccaatgatgcatgcaaaccaaccgcc------acctctacgtcacaaagaggggcaaaccattccgttctt 37857246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 35096833 - 35096687
Alignment:
Q  14 ttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgccagaacaaatgcac 113  Q
    ||||||| ||||||||| | |||||||||||| || | ||| || || |||| |||||| | ||| ||||||||||||||  |||| ||||||||  |||    
T  35096833 ttagagacccaatccaaagctgtatgcaaaccgacagtctcccctacatctatatcacacaaaggagcaaaccattccgtctttgcaagaacaaaaacac 35096734  T
Q  114 catcatcatctttaaggcacatgcccagtccaaccctgttaagagaa 160  Q
    || |||||||| |||| ||||| |||| |||||| || |||||||||    
T  35096733 caacatcatctctaagacacatacccaatccaactctattaagagaa 35096687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 9631992 - 9632046
Alignment:
Q  146 accctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 200  Q
    ||||| |||||||| |||||||||||||||| ||| || ||||||||||| ||||    
T  9631992 accctattaagagaggtagaaaaggatgcatcaatattacatttataccttccag 9632046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 12129393 - 12129192
Alignment:
Q  4 aaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgccaga 103  Q
    ||||||||| ||||||| ||||||||| || || || |  ||||| || || ||||| |||| | |||||| |||| |||||||||  |||||||| ||     
T  12129393 aaattgttgattagagagccaatccaaagtcgtgtgtagtccaacagcttcccccacatctataacacaaatagggacaaaccattatgttcttgcaagt 12129294  T
Q  104 acaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccagttg 203  Q
    ||||| ||||||||||||||  |||| ||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  12129293 acaaaagcaccatcatcatccctaagacacatgcccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgttgcatttatacctgccaggtg 12129194  T
Q  204 tc 205  Q
    ||    
T  12129193 tc 12129192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 10325407 - 10325505
Alignment:
Q  118 atcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccagttgtcaacttcttcca 216  Q
    ||||||| |||||||||| ||||  | |||||| |||||||| || ||||||||||||| |||||| ||||| ||||||||| ||| | | ||||||||    
T  10325407 atcatctctaaggcacattcccaaacgaaccctattaagagaggtggaaaaggatgcatcaatgttacatttgtacctgccatttgccgatttcttcca 10325505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 9451339 - 9451248
Alignment:
Q  9 gttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctc-ccacctctacatcacaaagaggggcaaaccattccgttcttgc 99  Q
    |||| ||||||||||||||||| ||||| || || | ||| ||||| | |||| |||| |||| |||||||||||||||||| |||||||||    
T  9451339 gttgattagagatccaatccaaagttgtgtgtaatcgaacagcctccctccacatctatatcataaagaggggcaaaccatttcgttcttgc 9451248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 10346707 - 10346904
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcc 100  Q
    |||||||||||| ||||||||||||||||| ||||| |||| ||| || ||||| || || |||| |||||| ||||| ||||||||||||||  ||||     
T  10346707 atcaaattgttgattagagatccaatccaaagttgtgtgcataccgacagcctcccctacatctatatcacagagaggagcaaaccattccgtctttgca 10346806  T
Q  101 agaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgcc 198  Q
    ||||||||  ||||| |||||||| |||| ||||||||||  ||| || | |||||| |||| ||||| |||||||  ||||||||||||||||||||    
T  10346807 agaacaaaaacaccaacatcatctctaagacacatgcccaaaccagccatattaagataagtggaaaaagatgcatctatgttgcatttatacctgcc 10346904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 47703959 - 47704158
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcc 100  Q
    |||||||||||| ||||||| ||||||||| |  || || |  ||||| || || ||||| |||| |||||||| ||||||||||||||| | ||||||     
T  47703959 atcaaattgttgattagagagccaatccaaagccgtgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgctcttgca 47704058  T
Q  101 agaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 200  Q
    || ||||| ||||||| ||||||  |||| ||||||||||  |||||| |||||||||||||| | ||||||||||  ||||||||||||||||||||||    
T  47704059 agtacaaaagcaccattatcatccctaagacacatgcccaacccaaccatgttaagagaagtaaagaaggatgcatctatgttgcatttatacctgccag 47704158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 26731150 - 26731294
Alignment:
Q  56 cccacctctacatcacaaagaggggcaaaccattccgttcttgccagaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaa 155  Q
    ||||| |||| |||||||| ||||||||||||||  |||||||| || |||||  |||||||||||||  |||| ||||||||||  ||||||||||||     
T  26731150 cccacatctatatcacaaataggggcaaaccattatgttcttgcaagtacaaaaacaccatcatcatccctaagacacatgcccaaaccaaccctgttag 26731249  T
Q  156 gagaagtagaaaaggatgcattaatgttgcatttatacctgccag 200  Q
    ||||| ||||||| ||||||| |||||||||||||||||||||||    
T  26731250 gagaaatagaaaatgatgcatcaatgttgcatttatacctgccag 26731294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 1017850 - 1018041
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcc 100  Q
    |||||||||||| ||||||| ||||||||| |  || || |  || || || || ||||| |||| |||||||| |||||||||| |||  ||||||||     
T  1017850 atcaaattgttgattagagagccaatccaaagccgtgtgtagtcccacagcttcccccacatctatatcacaaataggggcaaactattttgttcttgca 1017949  T
Q  101 agaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttata 192  Q
    || ||||| ||||||||||||||  |||| | ||||||||  |||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  1017950 agtacaaaagcaccatcatcatccctaagacgcatgcccaaaccaaccttgttaagagaagtagaaaaggatgcatcaatgttgcatttata 1018041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 21514 - 21709
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcc 100  Q
    |||||||| ||| ||||||||||||| ||| ||||| ||||| ||||| ||||| || || ||||  |||||||||||||| |||||||||||| ||||     
T  21514 atcaaatttttggttagagatccaattcaaagttgtgtgcaacccaacagcctcccctacgtctatgtcacaaagaggggcgaaccattccgtttttgca 21613  T
Q  101 agaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctg 196  Q
    ||||||||  ||||| ||||||||  ||| ||||| ||||  ||| |||||||||||  ||| ||||| ||||||| |||||||||||||||||||    
T  21614 agaacaaagacaccagcatcatctcgaagacacatacccaaaccacccctgttaagattagtggaaaaagatgcatcaatgttgcatttatacctg 21709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 24870304 - 24870119
Alignment:
Q  14 ttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgccagaacaaatgcac 113  Q
    ||||||| ||||||||| ||||| || |  ||||| ||||| ||||  |||| |||||||||||||||||||||||| |||||| | ||||||||   ||    
T  24870304 ttagagagccaatccaaagttgtgtgtagtccaacagcctcccccaaatctatatcacaaagaggggcaaaccattctgttcttacaagaacaaaaatac 24870205  T
Q  114 catcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgcca 199  Q
    ||||||||||  ||   ||||||||||  |||||| ||||||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  24870204 catcatcatccctataacacatgcccaaaccaaccttgttaagagaagtggaaaatgatgcatcaatgttgcatttatacctgcca 24870119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 24275129 - 24274930
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcc 100  Q
    |||||| ||||| ||||||| ||||||||| |  || || |  ||||| || || |||||  ||| |||||||| ||||||||||||||  ||||||||     
T  24275129 atcaaactgttgattagagagccaatccaaagccgtgtgtagtccaacagcttcccccacacctatatcacaaataggggcaaaccattatgttcttgca 24275030  T
Q  101 agaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 200  Q
    || ||| | ||||||||||||||  |||| |||||| |||  |||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||    
T  24275029 agtacagaagcaccatcatcatccctaagacacatgtccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgctgcatttatatctgccag 24274930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 24387084 - 24387283
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcc 100  Q
    |||||| ||||| ||||||| ||||||||| |  || || |  ||||| || || |||||  ||| |||||||| ||||||||||||||  ||||||||     
T  24387084 atcaaactgttgattagagagccaatccaaagccgtgtgtagtccaacagcttcccccacacctatatcacaaataggggcaaaccattatgttcttgca 24387183  T
Q  101 agaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 200  Q
    || ||| | ||||||||||||||  |||| |||||| |||  |||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||    
T  24387184 agtacagaagcaccatcatcatccctaagacacatgtccaaaccaaccctgttaagagaagtagaaaaggatgcatcaatgctgcatttatatctgccag 24387283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 30304708 - 30304533
Alignment:
Q  1 atcaaattgttgtttagagatccaatccaaggttgtatgcaaaccaaccgcctctcccacctctacatcacaaagaggggcaaaccattccgttcttgcc 100  Q
    |||||||| ||| ||||||| ||||||||| |  || || |  ||||| || || ||||| |||| |||||||| ||||||||||||||| ||||||||     
T  30304708 atcaaatttttgattagagagccaatccaaagccgtgtgtagtccaacagcttcccccacatctatatcacaaataggggcaaaccattctgttcttgca 30304609  T
Q  101 agaacaaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcat 176  Q
    || ||||| || |||||||||||  |||| ||||||||||  ||||||||||||||||||||||||||||||||||    
T  30304608 agtacaaaagcgccatcatcatccctaagacacatgcccaacccaaccctgttaagagaagtagaaaaggatgcat 30304533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 200
Target Start/End: Original strand, 8703810 - 8703905
Alignment:
Q  105 caaatgcaccatcatcatctttaaggcacatgcccagtccaaccctgttaagagaagtagaaaaggatgcattaatgttgcatttatacctgccag 200  Q
    |||| |||||||| |||||  |||||||||||||||| |||||||| | |||||||| |||||| ||||||| |||||||||||||||||||||||    
T  8703810 caaaagcaccatcgtcatccctaaggcacatgcccagaccaaccctctgaagagaagcagaaaaagatgcatcaatgttgcatttatacctgccag 8703905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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