View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6592_low_5 (Length: 347)
Name: NF6592_low_5
Description: NF6592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6592_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 22 - 327
Target Start/End: Original strand, 38362463 - 38362765
Alignment:
| Q |
22 |
aaatgatgatttgggtctaatgtaatatttccttgaccttgatgtagttgaacaaaatgatggaatcattatttcttagaaaaagtacgcaagtgatagt |
121 |
Q |
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| T |
38362463 |
aaatgatgatttgggtctaatgtaatatttccttgaccttgatgtagttcaacaaaatgatggaatcatcatttcttagaaaaagtacgcaagtaatatt |
38362562 |
T |
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| Q |
122 |
ttgaagaagttcaggatagagcatgcaaagctgattttcaagtcatttgaaatatttggatggaatatgaatgaatagtttgtgctcatatagtattgtg |
221 |
Q |
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| T |
38362563 |
ttgaagaagttcaggatagagcatgcaaagctgattttcaagtcatttgaaatatttggatggaatatgaatgaatagtttgtgctcatatag---tgtg |
38362659 |
T |
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| Q |
222 |
tttgtgtgatatggtcagtagtccaattttggtaacagtcagactcatttgcatttattggtgcctcacataccaattgattgatatagagtaccttaca |
321 |
Q |
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| T |
38362660 |
tctgtgtgatatggtcagtagtccaattttggtaacagtcagactcatttgcatttattggtgcctcacataccaattgattgatttagagtaccttaca |
38362759 |
T |
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| Q |
322 |
cgtagg |
327 |
Q |
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| T |
38362760 |
cgtagg |
38362765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 42303396 - 42303468
Alignment:
| Q |
80 |
gatggaatcattatttcttagaaaaagtacgcaagtgatagtttgaagaagttcaggatagagcatgcaaagc |
152 |
Q |
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| T |
42303396 |
gatggaatctttatttctcaaaagaagtatgcaagtgatattttgaagaagttcaagatggagcattcaaagc |
42303468 |
T |
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