View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6592_low_9 (Length: 304)
Name: NF6592_low_9
Description: NF6592
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6592_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 56311749 - 56311894
Alignment:
| Q |
25 |
tgttgttgttagttagttagagagagtggatggcaatagcagccgcaacatcatcacctaacatgagcagcatgagcttgagtcacgaagatggaacttc |
124 |
Q |
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| T |
56311749 |
tgttgttgttagttagttagagagagtggatggcaatagcagcagcaacatcatcacctaacatgagcagcatgagcttgagtcacgaagatggaacttc |
56311848 |
T |
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| Q |
125 |
taacgataatattaacaaaggagctacagctacagttacagtagta |
170 |
Q |
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| T |
56311849 |
taacgataatattaacaaaggagctacagctacagttacagtagta |
56311894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 192 - 304
Target Start/End: Original strand, 56311922 - 56312034
Alignment:
| Q |
192 |
cacgagcatgacgtggttatgccagggtttcgtttccatccaactgaagaagaacttgtagagttctaccttcgccgtaaggtcgagggaaaacgtttca |
291 |
Q |
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| T |
56311922 |
cacgagcatgacgtggttatgccagggtttcgtttccatccaactgaagaagaacttgtagagttctaccttcgccgtaaggtcgagggaaaacgtttca |
56312021 |
T |
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| Q |
292 |
acgttgagcttat |
304 |
Q |
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| T |
56312022 |
acgttgagcttat |
56312034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 8449724 - 8449761
Alignment:
| Q |
213 |
ccagggtttcgtttccatccaactgaagaagaacttgt |
250 |
Q |
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| T |
8449724 |
ccagggtttcgtttccacccaactgatgaagaacttgt |
8449761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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