View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6593_high_1 (Length: 730)
Name: NF6593_high_1
Description: NF6593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6593_high_1 |
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| [»] scaffold0263 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 19 - 716
Target Start/End: Original strand, 42594416 - 42595121
Alignment:
| Q |
19 |
cttagtgctgtccatgaactggctgaaatcagtatctgtagtgaaatccgcaaaattactttggaaaatttcaataatgaaaaggagaatattctgccaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
42594416 |
cttagtgctgtccatgaactggctgaaatcagtatctgtagtgaaatccgcaaaattactttggaaaacttcaataatgaaaaggagaatattctgccta |
42594515 |
T |
|
| Q |
119 |
aaaacgttgtggtgagtttagttccttcaattggttttttatactatgctagtcattgttcattctttttatggaagcatttagatacttctgttttaag |
218 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42594516 |
aaaacgttgtggtgagtttagttccttgaattggttgtttatactatgctagtcattgttcattctttttatggaagcatttagatacttctgttttaag |
42594615 |
T |
|
| Q |
219 |
gcgtacattaaaatactttttaaaaagaatatacctgtttagatggaacttagac----tttgtatagagaatatgaattaccagttctacttataattt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42594616 |
gcgtacattaaaatactttttaaaaagaatatacctgtttagatggaacttagacttaatttgtatagagaatatgaattaccagttcaacttataattt |
42594715 |
T |
|
| Q |
315 |
gatatttatctgagt---aggagagatctatgtgaatgatatcaacgaaactatatctgaaatagcaagcaattgcttaaacttgcttccat---tgtca |
408 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
42594716 |
gatatttatctgagtctgaggagagatctatgtgaatgatatcaacgaatctatatctgaaatagcaagcaattgcttaaacttgcttccatttctgaca |
42594815 |
T |
|
| Q |
409 |
gtgtacggtttaggattttagttagatgctattgtaatttgtaactatctatgtgagttcaaatttgaaaagttatatttggtattagttcataatgcct |
508 |
Q |
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| T |
42594816 |
gtgtacggtttaggattttagttagatgctattgtaatttgtaactatctatgtgagttcaaatttgaaaagttatatttggtattagttcataatgcct |
42594915 |
T |
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| Q |
509 |
agatttccgtaaactgtgatgctgttatgttatgaaattgaacacatctatgttggatagttagtgttgaagcttatactgaataatagtaaacccccaa |
608 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
42594916 |
agatttccgtaaacggtgatgctgttatgttatgaaattgaacacatctatgttggatagttagtgctgaagcttatactgaataatagtaaa--cccaa |
42595013 |
T |
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| Q |
609 |
gtatgtgtaatgttaagtaaatttgttggactatcaaagttgaatcgttgtggtatcatgtacttttttcctaagaatcaatggcttatcttggaatgga |
708 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
42595014 |
gtatgtgtaatgttaagtaaatttgttggactatcaaagttgaatcgttgtggtatcatgtacttttttcctaagaatcaatggcttattttggaattga |
42595113 |
T |
|
| Q |
709 |
agtataat |
716 |
Q |
| |
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|||||||| |
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| T |
42595114 |
agtataat |
42595121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 9e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 533 - 704
Target Start/End: Complemental strand, 16179666 - 16179498
Alignment:
| Q |
533 |
ttatgttatgaaattgaacacatctatgttggatagttagtgttgaagcttatactgaataatagtaaacccccaagtatgtgtaatgttaagtaaattt |
632 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |
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| T |
16179666 |
ttatgttatgaa-ttgaacacatctatgttggatagttagtgttgaagcttatactgaataatagtaaattc--aagtctgtgtaatgttaagtaaattt |
16179570 |
T |
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| Q |
633 |
gttggactatcaaagttgaatcgttgtggtatcatgtacttttttcctaagaatcaatggcttatcttggaa |
704 |
Q |
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| T |
16179569 |
gttggattatcaaagttgaatcgttgtggtatcatgtacttttttcctaagaatcaatggcttattttggaa |
16179498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 417 - 495
Target Start/End: Original strand, 1643 - 1722
Alignment:
| Q |
417 |
tttaggattttagttagatgctattgtaatttgt-aactatctatgtgagttcaaatttgaaaagttatatttggtatta |
495 |
Q |
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|||||| |||||||||||| | ||||||| || |||| |||||| |||||||||||||||| |||||| ||||||||| |
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| T |
1643 |
tttagggttttagttagataccattgtaaattaagaactgtctatgcgagttcaaatttgaaatgttataattggtatta |
1722 |
T |
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