View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6593_high_11 (Length: 247)
Name: NF6593_high_11
Description: NF6593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6593_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 49396658 - 49396899
Alignment:
| Q |
1 |
tatttcacccgaaatagtagttttatttgcctagttctgttagtccaagtccatttataccttaagaattgttaatcggaatcaaatgagccaccaattt |
100 |
Q |
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| T |
49396658 |
tatttcacccgaaatagtagttttatttgcctagttctgttagtccaagtccatttataccttaagaattgttaatcggaatcaaatgagccaccaactt |
49396757 |
T |
|
| Q |
101 |
tctctaacatttcattcttataaacatctttcataagtaaaaataaaataga-nnnnnnnnngtgtggctatcgtccatgattacaaccaataataacaa |
199 |
Q |
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| T |
49396758 |
tctctaacatttcattcttataaacatctttcataagtaaaaataaaatagattttttttttgtgtggctatcgtccatgattacaaccaataataacaa |
49396857 |
T |
|
| Q |
200 |
aatgtacggtaaaaacaacaaactagaccaagatccagtata |
241 |
Q |
| |
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| T |
49396858 |
aatgtacggtaaaaacaacaaactagaccaagatccagtata |
49396899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 29015477 - 29015405
Alignment:
| Q |
59 |
accttaagaattgttaatcggaatcaaatgagccaccaattttctctaacatttcattcttataaacatcttt |
131 |
Q |
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| T |
29015477 |
accttaataattgttaattagaataaaataagctgtcaattttctataacattttattcttataaatatcttt |
29015405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 37575588 - 37575652
Alignment:
| Q |
84 |
aaatgagccaccaattttctctaacatttcattcttataaacatctttcataagtaaaaataaaa |
148 |
Q |
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| T |
37575588 |
aaataagccaccaacttcttctaacatttcatttttaaaaacatctttcatatgtaaaaaaaaaa |
37575652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 47350606 - 47350650
Alignment:
| Q |
99 |
tttctctaacatttcattcttataaacatctttcataagtaaaaa |
143 |
Q |
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||||| |||||||||| | |||||||||||||||||| ||||||| |
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| T |
47350606 |
tttctttaacatttcagttttataaacatctttcatatgtaaaaa |
47350650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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