View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6593_high_4 (Length: 441)

Name: NF6593_high_4
Description: NF6593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6593_high_4
NF6593_high_4
[»] chr3 (19 HSPs)
chr3 (1-199)||(49396306-49396504)
chr3 (278-378)||(49396112-49396213)
chr3 (60-154)||(37055450-37055544)
chr3 (74-154)||(33411502-33411581)
chr3 (68-122)||(30472983-30473037)
chr3 (56-138)||(46492423-46492505)
chr3 (69-153)||(51339276-51339360)
chr3 (59-138)||(15862988-15863067)
chr3 (67-138)||(46845531-46845602)
chr3 (56-154)||(2571269-2571366)
chr3 (56-154)||(11610915-11611012)
chr3 (56-154)||(12515554-12515651)
chr3 (56-102)||(23320122-23320168)
chr3 (56-101)||(33474553-33474598)
chr3 (69-154)||(51618050-51618135)
chr3 (56-137)||(53794781-53794862)
chr3 (68-156)||(20938055-20938143)
chr3 (55-95)||(39248510-39248550)
chr3 (60-96)||(53537075-53537111)
[»] chr8 (17 HSPs)
chr8 (56-154)||(12131983-12132081)
chr8 (59-127)||(5573315-5573383)
chr8 (60-154)||(6818017-6818111)
chr8 (56-154)||(14816205-14816303)
chr8 (56-154)||(14829437-14829535)
chr8 (56-154)||(35678354-35678452)
chr8 (56-154)||(44222514-44222611)
chr8 (59-154)||(13496814-13496910)
chr8 (56-95)||(7393324-7393363)
chr8 (56-154)||(2161388-2161485)
chr8 (64-154)||(9824959-9825049)
chr8 (56-114)||(34741745-34741802)
chr8 (69-154)||(10129104-10129189)
chr8 (56-137)||(20514650-20514731)
chr8 (56-101)||(40226067-40226112)
chr8 (70-154)||(13328034-13328118)
chr8 (70-154)||(40210914-40210998)
[»] chr6 (12 HSPs)
chr6 (56-154)||(29730278-29730376)
chr6 (56-154)||(3485678-3485776)
chr6 (56-154)||(8977546-8977644)
chr6 (60-154)||(29863386-29863480)
chr6 (61-137)||(31039721-31039797)
chr6 (56-154)||(14228206-14228303)
chr6 (56-154)||(28943849-28943946)
chr6 (56-154)||(33017725-33017822)
chr6 (56-101)||(6016909-6016954)
chr6 (56-101)||(30591243-30591288)
chr6 (56-104)||(18332768-18332816)
chr6 (58-154)||(26602512-26602608)
[»] chr7 (18 HSPs)
chr7 (56-154)||(39869123-39869221)
chr7 (56-102)||(11680098-11680144)
chr7 (64-138)||(42750305-42750378)
chr7 (57-137)||(3530195-3530274)
chr7 (56-134)||(8091392-8091470)
chr7 (56-154)||(19868114-19868212)
chr7 (56-114)||(47707964-47708022)
chr7 (69-154)||(24250314-24250399)
chr7 (58-154)||(7040333-7040429)
chr7 (56-154)||(19889341-19889438)
chr7 (56-154)||(33342989-33343086)
chr7 (70-127)||(16800578-16800634)
chr7 (56-101)||(24699188-24699233)
chr7 (56-101)||(38554291-38554336)
chr7 (69-154)||(39757202-39757287)
chr7 (56-96)||(2276733-2276773)
chr7 (56-104)||(7899566-7899614)
chr7 (110-154)||(19837186-19837230)
[»] chr4 (28 HSPs)
chr4 (56-154)||(2096871-2096969)
chr4 (58-154)||(34941278-34941374)
chr4 (56-135)||(35645081-35645163)
chr4 (56-136)||(38222304-38222384)
chr4 (15-153)||(42479960-42480099)
chr4 (57-104)||(27298941-27298988)
chr4 (68-138)||(24993548-24993618)
chr4 (56-96)||(55813922-55813962)
chr4 (56-154)||(6875501-6875599)
chr4 (116-154)||(9327009-9327047)
chr4 (116-154)||(9373731-9373769)
chr4 (116-154)||(9382043-9382081)
chr4 (56-154)||(9759222-9759319)
chr4 (56-154)||(23545476-23545574)
chr4 (9-43)||(35645063-35645097)
chr4 (56-154)||(49332333-49332431)
chr4 (56-154)||(50352303-50352400)
chr4 (60-102)||(53376493-53376535)
chr4 (56-101)||(4779516-4779561)
chr4 (69-138)||(10813587-10813656)
chr4 (56-121)||(37784940-37785005)
chr4 (56-104)||(8736890-8736938)
chr4 (68-104)||(16069299-16069335)
chr4 (56-104)||(16667464-16667512)
chr4 (58-134)||(24297392-24297468)
chr4 (70-138)||(29190909-29190977)
chr4 (56-104)||(39539514-39539562)
chr4 (56-96)||(51070476-51070516)
[»] chr1 (19 HSPs)
chr1 (58-138)||(36490795-36490875)
chr1 (56-154)||(6520712-6520809)
chr1 (58-154)||(34050365-34050461)
chr1 (56-154)||(23591698-23591796)
chr1 (56-154)||(39627651-39627749)
chr1 (65-138)||(11744917-11744990)
chr1 (56-154)||(1502800-1502897)
chr1 (56-154)||(23576494-23576591)
chr1 (69-154)||(313750-313835)
chr1 (56-101)||(9516634-9516679)
chr1 (58-127)||(30109088-30109157)
chr1 (58-154)||(6307503-6307599)
chr1 (56-138)||(25956665-25956747)
chr1 (56-154)||(39150407-39150504)
chr1 (64-101)||(19277841-19277878)
chr1 (57-138)||(25465175-25465255)
chr1 (56-85)||(33048192-33048221)
chr1 (56-101)||(35438768-35438813)
chr1 (56-104)||(51920511-51920559)
[»] chr2 (20 HSPs)
chr2 (56-154)||(15411702-15411800)
chr2 (56-151)||(20566097-20566192)
chr2 (56-138)||(9450273-9450355)
chr2 (60-154)||(23932565-23932659)
chr2 (56-154)||(27865895-27865992)
chr2 (56-154)||(34817544-34817641)
chr2 (56-137)||(2051631-2051712)
chr2 (57-154)||(34214032-34214129)
chr2 (56-135)||(25998082-25998161)
chr2 (63-154)||(39367059-39367150)
chr2 (67-138)||(43388857-43388928)
chr2 (56-154)||(5583638-5583735)
chr2 (56-154)||(27665124-27665221)
chr2 (56-114)||(40503061-40503119)
chr2 (56-153)||(45302340-45302438)
chr2 (56-101)||(5853543-5853588)
chr2 (69-154)||(16126651-16126736)
chr2 (56-101)||(16493612-16493657)
chr2 (56-101)||(22704590-22704635)
chr2 (56-101)||(25948092-25948137)
[»] chr5 (12 HSPs)
chr5 (56-139)||(28629894-28629976)
chr5 (56-154)||(5958203-5958301)
chr5 (56-154)||(11636732-11636830)
chr5 (56-108)||(40166328-40166380)
chr5 (56-154)||(315342-315441)
chr5 (56-96)||(15241030-15241070)
chr5 (56-154)||(15190873-15190970)
chr5 (56-154)||(30839782-30839879)
chr5 (56-154)||(36597580-36597677)
chr5 (69-154)||(4047413-4047498)
chr5 (109-154)||(15241225-15241270)
chr5 (61-101)||(11264647-11264687)
[»] scaffold0073 (1 HSPs)
scaffold0073 (58-154)||(16616-16712)
[»] scaffold0305 (2 HSPs)
scaffold0305 (56-133)||(17868-17946)
scaffold0305 (56-92)||(18076-18112)
[»] scaffold0149 (1 HSPs)
scaffold0149 (56-102)||(22516-22562)
[»] scaffold0011 (1 HSPs)
scaffold0011 (69-154)||(13086-13171)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 49396504 - 49396306
Alignment:
Q  1 tgaattgaagtttatgcattttatattaaatatataaccttttctttgaagaagctaaatatataactttttaataaataattgtagtttttcaatcaaa 100  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49396504 tgaattaaaatttatgcattttatattaaatatataaccttttctttgaagaagctaaatatataactttttaataaataattgtagtttttcaatcaaa 49396405  T
Q  101 aattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaacactggatatatactctcttcgttccaaaataacttagtcatttgc 199  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| ||||||||    
T  49396404 aattgttatttttagttcctttaacatatgcaatattgtgtatgttagacaaacattggatatacactcccttcgttccaaaataacttaatcatttgc 49396306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 278 - 378
Target Start/End: Complemental strand, 49396213 - 49396112
Alignment:
Q  278 cactctaattcaatatattctactatgcattttannnnnnn-acaaatattatgtatttattataatcgagaatgcatcaatatttgataagacatttaa 376  Q
    ||||||||||||||||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  49396213 cactctaattcaatatattctactatgcattttattttttttacaaatactatgtatttattataatcgagaatgcatcaatatttgataagacgtttaa 49396114  T
Q  377 aa 378  Q
    ||    
T  49396113 aa 49396112  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 37055450 - 37055544
Alignment:
Q  60 tatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||| |||||||||||||||||||||  |||||||||  ||| ||  |||||||| || |||||||||||||||||||||  |||||||||||||    
T  37055450 tataaaactttttaataaataattgttctttttcaatgtaaagttactatttttagttcctttaacatatgcaatattgtacatgttagacaaac 37055544  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 33411581 - 33411502
Alignment:
Q  74 ataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||||||||  ||||| ||| ||||||| ||||||||| ||| ||||| |||||||||||||| ||||||||||||||    
T  33411581 ataaataattgtttttttt-aataaaaaattattatttttaatttttttaatatatgcaatattgtatatgttagacaaac 33411502  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 30472983 - 30473037
Alignment:
Q  68 tttttaataaataattgtagtttttcaatcaaaaattgttatttttattttcttt 122  Q
    |||||||||||| ||||| |||||| ||| |||||||||||||||| ||||||||    
T  30472983 tttttaataaatgattgttgtttttaaataaaaaattgttatttttgttttcttt 30473037  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 46492423 - 46492505
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattg 138  Q
    |||||||||||||  ||||||||||||||| |||||||||| |||| ||   | ||||| || ||||||||| ||||||||||    
T  46492423 taaatatataactcgttaataaataattgttgtttttcaataaaaacttaccacttttagttgctttaacatgtgcaatattg 46492505  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 51339276 - 51339360
Alignment:
Q  69 ttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaa 153  Q
    ||||||| ||||||||| | |||||||| |||||||  |||||||| || | ||||||| ||||||||||   ||||||||||||    
T  51339276 ttttaatcaataattgttggttttcaatgaaaaattactatttttagttaccttaacatgtgcaatattgcacatgttagacaaa 51339360  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 15862988 - 15863067
Alignment:
Q  59 atatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattg 138  Q
    ||||||||||||| |||||||||||||  |||||||||  ||| ||| || ||||| || || |||||| ||||||||||    
T  15862988 atatataacttttaaataaataattgttctttttcaatgtaaagttgctacttttaattcctgtaacatgtgcaatattg 15863067  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 46845531 - 46845602
Alignment:
Q  67 ctttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattg 138  Q
    ||||||||||||||||||| | |||||||| |||||||  || ||||| || |||||| || ||||||||||    
T  46845531 ctttttaataaataattgttgattttcaataaaaaatttctacttttagttgctttaagatgtgcaatattg 46845602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 2571366 - 2571269
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||  ||||||||||| |  ||||||| |||| ||| || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  2571366 taaatatataactttttgttaaataattgttg-gtttcaataaaaacttgctacttttagttaccttaacatgtgcaatattgcacatgttagacaaac 2571269  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 11611012 - 11610915
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| |||||||| ||||||||||||| | |||||||| |||| ||  || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  11611012 taaatatgtaactttt-aataaataattgttggttttcaatgaaaagttactacttttagttgccttaacatgtgcaatattgcacatgttagacaaac 11610915  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 12515554 - 12515651
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||  ||||||||||| | |||| ||| |||| ||| || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  12515554 taaatatataactttttgttaaataattgttggtttt-aataaaaacttgctacttttagttaccttaacatgtgcaatattgcacatgttagacaaac 12515651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 23320168 - 23320122
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaa 102  Q
    |||||||||| ||||||||||||||||||  |||||||||| |||||    
T  23320168 taaatatatatctttttaataaataattgatgtttttcaataaaaaa 23320122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 33474553 - 33474598
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaa 101  Q
    ||||||||||| |||| ||||||||||||| |||||||||| ||||    
T  33474553 taaatatataatttttaaataaataattgttgtttttcaataaaaa 33474598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 51618135 - 51618050
Alignment:
Q  69 ttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||||||||||||| |||||||| | |||| ||| |  ||||| ||  |||||||| ||||||||||   |||||||||||||    
T  51618135 ttttaataaataattgttgtttttcagtaaaaacttgctgcttttagttgttttaacatgtgcaatattgcacatgttagacaaac 51618050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 53794862 - 53794781
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatatt 137  Q
    ||||||| |||||||||||||||| |||||   |||||||| || | || ||||||||| ||  |||||||| |||||||||    
T  53794862 taaatatgtaactttttaataaattattgttacttttcaataaatagttattatttttagttggtttaacatgtgcaatatt 53794781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 20938143 - 20938055
Alignment:
Q  68 tttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaacac 156  Q
    |||||||| |||||||||   |||||||| |||| || ||| ||||| || | ||||||| ||||||||||   |||||||||||||||    
T  20938143 tttttaatcaataattgttagttttcaataaaaagttattacttttagttaccttaacatgtgcaatattgcacatgttagacaaacac 20938055  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 39248550 - 39248510
Alignment:
Q  55 ctaaatatataactttttaataaataattgtagtttttcaa 95  Q
    |||||||||||| |||||||||||||||| | |||||||||    
T  39248550 ctaaatatataattttttaataaataatttttgtttttcaa 39248510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 53537075 - 53537111
Alignment:
Q  60 tatataactttttaataaataattgtagtttttcaat 96  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  53537075 tataaaactttttaataaataattgttgtttttcaat 53537111  T

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Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 12132081 - 12131983
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||||||||||||||||||||| |||| |||||||||| |||| ||| || ||||| |||||||||||| |||||| |||   |||||||||||||    
T  12132081 taaatatataactttttaataaatacttgtggtttttcaataaaaagttgctacttttagtttctttaacatgtgcaatgttgcacatgttagacaaac 12131983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 5573383 - 5573315
Alignment:
Q  59 atatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacat 127  Q
    ||||||||||||||||||||| ||||| |||||||||| |||| |||||||||||| ||  ||||||||    
T  5573383 atatataactttttaataaatgattgttgtttttcaataaaaacttgttatttttagttattttaacat 5573315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 6818111 - 6818017
Alignment:
Q  60 tatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||| |||||||||||||||||||||  |||||||||  ||| ||  |||||||| || ||||||||||| ||||||||   |||||||||||||    
T  6818111 tataaaactttttaataaataattgttctttttcaatgtaaagttactatttttagttcctttaacatatacaatattgcacatgttagacaaac 6818017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 14816205 - 14816303
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| ||| |||||||||| ||||||| | |||||||| |||| ||  || ||||| |||||||||||| ||||||||||   |||||||||||||    
T  14816205 taaatatgtaaatttttaataattaattgttggttttcaataaaaagttactacttttagtttctttaacatgtgcaatattgcacatgttagacaaac 14816303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 14829535 - 14829437
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| ||| |||||||||| ||||||| | |||||||| |||| ||  || ||||| |||||||||||| ||||||||||   |||||||||||||    
T  14829535 taaatatgtaaatttttaataattaattgttggttttcaataaaaagttactacttttagtttctttaacatgtgcaatattgcacatgttagacaaac 14829437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 35678354 - 35678452
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| ||| |||||||||| ||||||| | |||||||| |||| ||  || ||||| |||||||||||| ||||||||||   |||||||||||||    
T  35678354 taaatatgtaaatttttaataattaattgttggttttcaatgaaaagttactacttttagtttctttaacatgtgcaatattgcacatgttagacaaac 35678452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 44222514 - 44222611
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||||||  |||||||||||||||||| |||||| ||| ||||  ||||| ||||| || ||||||||| |||||||||   ||||||||||||||    
T  44222514 taaatatatacatttttaataaataattgttgttttt-aataaaaagatgttagttttagttgctttaacatgtgcaatattacatatgttagacaaac 44222611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 13496814 - 13496910
Alignment:
Q  59 atatataactttttaataaataattgtagtttttcaatcaaaaattgtta-tttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||| |||||||||||||||||||||  |||||||||  ||| ||  || |||||| || ||||||||| ||||||||||   |||||||||||||    
T  13496814 atataaaactttttaataaataattgttctttttcaatgtaaagttactattttttagttcctttaacatgtgcaatattgcacatgttagacaaac 13496910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 7393324 - 7393363
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaa 95  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  7393324 taaatatataactttttaataaataattggtgtttttcaa 7393363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 2161485 - 2161388
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||  ||||||||||| |  ||||||| |||| ||| || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  2161485 taaatatataactttttgttaaataattgttg-gtttcaataaaaacttgctacttttagttaccttaacatgtgcaatattgcacatgttagacaaac 2161388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 9825049 - 9824959
Alignment:
Q  64 taactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||||| |||||| ||||  |||||||||| |||| ||  || ||||| || | ||||||||| ||||||||  ||||||||||||||    
T  9825049 taacttttttataaattattgatgtttttcaataaaaagttactaattttaattgcattaacatatacaatattgcatatgttagacaaac 9824959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 34741745 - 34741802
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttattttta 114  Q
    ||||||||||| |||||||||||||||| | | |||||||| |||| ||||||||||||    
T  34741745 taaatatataattttttaataaataattattg-ttttcaattaaaagttgttattttta 34741802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 10129189 - 10129104
Alignment:
Q  69 ttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| ||||||||| | |||||||| |||||||  || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  10129189 ttttaatcaataattgttggttttcaatgaaaaattactaattttagttaccttaacatgtgcaatattgcacatgttagacaaac 10129104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 20514731 - 20514650
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatatt 137  Q
    |||||||||||||||||||||||||||||   ||||||||| | |||||  || ||| | || ||||| ||| |||||||||    
T  20514731 taaatatataactttttaataaataattggtatttttcaataagaaattactactttaagttgctttaccatgtgcaatatt 20514650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 40226067 - 40226112
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaa 101  Q
    ||||||||||| |||| ||||||||||||| |||||||||| ||||    
T  40226067 taaatatataatttttaaataaataattgttgtttttcaataaaaa 40226112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 13328034 - 13328118
Alignment:
Q  70 tttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||| ||||||||| | |||||||| |||| ||  || ||||| || | ||||||||||||||||||   |||||||||||||    
T  13328034 tttaatcaataattgttggttttcaatgaaaagttactacttttagttaccttaacatatgcaatattgcacatgttagacaaac 13328118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 40210914 - 40210998
Alignment:
Q  70 tttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||| ||||||||| | |||||||| |||| ||  || ||||| || | ||||||||||||||||||   |||||||||||||    
T  40210914 tttaatcaataattgttggttttcaatgaaaagttaatacttttagttaccttaacatatgcaatattgcacatgttagacaaac 40210998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 29730376 - 29730278
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||||||||||| ||| |||||||||| |||| || ||| ||||| |  ||||||||||||||||||| | ||||| ||||||||    
T  29730376 taaatatataactttttaataaataactgttgtttttcaataaaaacttattaattttaatagctttaacatatgcaatattatatatgtcagacaaac 29730278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 3485678 - 3485776
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||||||| | ||| | |||||||||| ||||  || || ||||| || |||||||||||| ||||||   ||||||||||||||    
T  3485678 taaatatataactttttaataattgattattgtttttcaataaaaaggtgctaattttagttcctttaacatatgtaatattacatatgttagacaaac 3485776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 8977546 - 8977644
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| |||||||| ||||||| ||||| |||||||||| |||  ||| || ||||| |||| ||||||| ||||||||||   |||||||||||||    
T  8977546 taaatatgtaacttttcaataaatgattgttgtttttcaattaaaggttgctacttttagtttccttaacatgtgcaatattgcacatgttagacaaac 8977644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 29863386 - 29863480
Alignment:
Q  60 tatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||| ||||||||||||||||||| |  |||||||||  ||| ||  |||||||| || ||||||||| ||||||||||   |||||||||||||    
T  29863386 tataaaactttttaataaataattattctttttcaatgtaaagttactatttttagttcctttaacatgtgcaatattgcacatgttagacaaac 29863480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 31039797 - 31039721
Alignment:
Q  61 atataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatatt 137  Q
    ||||||||||||||||||||||| | |||||||||| || | ||  |||||||| || ||||||||  |||||||||    
T  31039797 atataactttttaataaataatttttgtttttcaataaatagttactatttttaattactttaacacgtgcaatatt 31039721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 14228206 - 14228303
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||  ||||||||||| |  ||||||| |||| ||| || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  14228206 taaatatataactttttgttaaataattgttg-gtttcaataaaaacttgctacttttaattaccttaacatgtgcaatattgcacatgttagacaaac 14228303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 28943849 - 28943946
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||  ||||||||||| |  ||||||| |||| ||| || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  28943849 taaatatataactttttgttaaataattgttg-gtttcaataaaaacttgctacttttaattaccttaacatgtgcaatattgcacatgttagacaaac 28943946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 33017822 - 33017725
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||  ||||||||||| | |||| ||| |||| ||| || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  33017822 taaatatataactttttgttaaataattgttggtttt-aataaaaacttgctaattttagttaccttaacatgtgcaatattgcacatgttagacaaac 33017725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 6016954 - 6016909
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaa 101  Q
    ||||||||||||||||||| |||||| ||| |||||||||| ||||    
T  6016954 taaatatataactttttaaaaaataagtgttgtttttcaatgaaaa 6016909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 30591243 - 30591288
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaa 101  Q
    ||||| ||||||||||| ||||||||||||| ||||||||| ||||    
T  30591243 taaatgtataactttttgataaataattgtattttttcaataaaaa 30591288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 18332768 - 18332816
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaatt 104  Q
    |||||||||| ||||||||||||||| | | |||||||||| |||||||    
T  18332768 taaatatatagctttttaataaataagttttgtttttcaataaaaaatt 18332816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 26602512 - 26602608
Alignment:
Q  58 aatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||| ||| |||||||||| ||||||| | |||||| | |||||||  || ||||| |||| |||| || ||||||||||   |||||||||||||    
T  26602512 aatatgtaagtttttaataattaattgttggttttcagtgaaaaattactacttttagtttccttaatatgtgcaatattgcacatgttagacaaac 26602608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 39869221 - 39869123
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| ||| |||||||||| ||||||| | |||||||| |||| ||  |||||||| |||||||||||| ||||||||||  ||||||||||||||    
T  39869221 taaatatgtaaatttttaataattaattgttggttttcaatgaaaagttactatttttagtttctttaacatgtgcaatattgcatatgttagacaaac 39869123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 11680098 - 11680144
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaa 102  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||    
T  11680098 taaatatataactttttaataaataattgttgtttttcaattaaaaa 11680144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 42750378 - 42750305
Alignment:
Q  64 taactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattg 138  Q
    |||||||||||||||||||| | ||||| |||| |||| || ||||||||| || ||||||||||||||||||||    
T  42750378 taactttttaataaataattattgtttt-caataaaaagttattatttttagttgctttaacatatgcaatattg 42750305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 3530195 - 3530274
Alignment:
Q  57 aaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatatt 137  Q
    |||||||||| |||||||||||||||||| | |||||||| ||||||| ||||| ||| || ||||||||| ||| |||||    
T  3530195 aaatatataattttttaataaataattgttg-ttttcaataaaaaattattattcttaattgctttaacatgtgcgatatt 3530274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 8091392 - 8091470
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaat 134  Q
    |||||||||||||||||||||||||||| | | |||||||| |||| ||| || ||||| || |||| |||| ||||||    
T  8091392 taaatatataactttttaataaataattattgattttcaataaaaatttgctacttttagttgctttgacatgtgcaat 8091470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 19868212 - 19868114
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||||||||||||| |||||||||||  |||||||||| |||| ||  || ||||| ||   ||||||| ||||||||||   |||||||||||||    
T  19868212 taaatatataactttttgataaataattggtgtttttcaatgaaaatttactacttttagttgtcttaacatgtgcaatattgcacatgttagacaaac 19868114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 47707964 - 47708022
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttattttta 114  Q
    |||||||||||||||||||||||||||||| ||||||| || |||  |||||| |||||    
T  47707964 taaatatataactttttaataaataattgttgtttttccataaaatcttgttactttta 47708022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 24250399 - 24250314
Alignment:
Q  69 ttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||||||||||||| | |||||||| |||| ||  || ||||| |||| ||||||| ||||||||||   |||||||||||||    
T  24250399 ttttaataaataattgttggttttcaatgaaaagttaatacttttagtttccttaacatgtgcaatattgcacatgttagacaaac 24250314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 7040333 - 7040429
Alignment:
Q  58 aatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||||| |||||||||||||||||| ||||| |||| || | |||    ||||| || |||||||||||||||| |||   |||||||||||||    
T  7040333 aatatataaatttttaataaataattgttgttttccaataaatagttgccgcttttagttactttaacatatgcaattttgcaaatgttagacaaac 7040429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 19889438 - 19889341
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| |||||||| ||||||||||||| | |||||||| |||| ||  || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  19889438 taaatatgtaactttt-aataaataattgttggttttcaatgaaaagttactacttttagttgccttaacatgtgcaatattgcacatgttagacaaac 19889341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 33343086 - 33342989
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||  ||||||||||| |  ||||||| |||| ||| || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  33343086 taaatatataactttttgttaaataattgttg-gtttcaataaaaacttgctacttttagttaccttaacatgtgcaatattgcacatgttagacaaac 33342989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 16800578 - 16800634
Alignment:
Q  70 tttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacat 127  Q
    |||||||||||||||| |||||||||| ||||  ||||| ||||| ||||||||||||    
T  16800578 tttaataaataattgttgtttttcaataaaaagatgttactttta-tttctttaacat 16800634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 24699233 - 24699188
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaa 101  Q
    ||||||| ||||||| |||||||||||||| |||||||||| ||||    
T  24699233 taaatatgtaactttataataaataattgttgtttttcaatgaaaa 24699188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 38554336 - 38554291
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaa 101  Q
    ||||||||||| ||||||||| |||||||| |||||||||| ||||    
T  38554336 taaatatataaatttttaatatataattgttgtttttcaataaaaa 38554291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 39757202 - 39757287
Alignment:
Q  69 ttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| ||||||||| | |||||||| |||||||  || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  39757202 ttttaatcaataattgttgattttcaatgaaaaattactacttttagttaccttaacatgtgcaatattgcacatgttagacaaac 39757287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 2276773 - 2276733
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaat 96  Q
    |||||| ||||||||||||||||||||||  ||||||||||    
T  2276773 taaatagataactttttaataaataattggtgtttttcaat 2276733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 7899566 - 7899614
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaatt 104  Q
    |||||||||||| ||||||||||| ||||  |||||||||| |||||||    
T  7899566 taaatatataacattttaataaattattggtgtttttcaatgaaaaatt 7899614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 19837186 - 19837230
Alignment:
Q  110 ttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||| |||||| ||||| | ||||||||||||||||||||||||    
T  19837186 ttttaatttcttaaacatgttcaatattgtgtatgttagacaaac 19837230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 2096969 - 2096871
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||||||||||||||| |||||||||| |||| |||| | ||||| ||  |||||| | ||||||||||   |||||||||||||    
T  2096969 taaatatataactttttaataaataattgttgtttttcaataaaaagttgtcacttttagttgatttaacttgtgcaatattgcacatgttagacaaac 2096871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 34941374 - 34941278
Alignment:
Q  58 aatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||||||||||||||||||| |||| |||||||||| |||| |||||| ||||| || | |||| || |||||||||    |||||||||||||    
T  34941374 aatatataactttttaataaatagttgttgtttttcaataaaaagttgttacttttagttaccttaatatgtgcaatattacacatgttagacaaac 34941278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 35645081 - 35645163
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaa---ttgttatttttattttctttaacatatgcaata 135  Q
    ||||||||||||||||||||||||||||||  ||||||||| |||||   ||| || ||||| |||||||||| |||||||||    
T  35645081 taaatatataactttttaataaataattgttatttttcaataaaaaaaagttgctacttttagtttctttaacgtatgcaata 35645163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 38222384 - 38222304
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatat 136  Q
    ||||||||||| |||||||||||||||||| | |||||| | |||| |||||| ||||| || ||||||||||| ||||||    
T  38222384 taaatatataattttttaataaataattgttgattttcactaaaaatttgttacttttagttcctttaacatatacaatat 38222304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 42479960 - 42480099
Alignment:
Q  15 tgcattttatattaaatatataacctttt-ctttgaagaagctaaatatataactttttaataaataattgtagtttttcaatcaaaaattgttattttt 113  Q
    |||||||||||| ||||||||||| |||| | |  || ||  |||||||||||||||||||||||||||||  |||||||||| |||  ||| || | ||    
T  42479960 tgcattttatatcaaatatataacttttttcctcaaaaaaattaaatatataactttttaataaataattgatgtttttcaataaaatgttgctactctt 42480059  T
Q  114 attttctttaacatatgcaatattgtgtatgttagacaaa 153  Q
    | || |||||| || ||||||||||  |||| ||||||||    
T  42480060 agttgctttaagatgtgcaatattgcatatgctagacaaa 42480099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 27298988 - 27298941
Alignment:
Q  57 aaatatataactttttaataaataattgtagtttttcaatcaaaaatt 104  Q
    ||||||||||||||||||||||||||||  |||||||||| |||||||    
T  27298988 aaatatataactttttaataaataattggtgtttttcaatgaaaaatt 27298941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 24993548 - 24993618
Alignment:
Q  68 tttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattg 138  Q
    |||||||||||| ||||| |||||||||| |||||| ||| |||||| ||  |||||||| ||||||||||    
T  24993548 tttttaataaatgattgttgtttttcaataaaaaatcgttttttttagttcatttaacatgtgcaatattg 24993618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 55813962 - 55813922
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaat 96  Q
    |||||||||||||||||||||||||||||| | ||||||||    
T  55813962 taaatatataactttttaataaataattgttgattttcaat 55813922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 6875599 - 6875501
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||| |||||||||| ||||||||||||   |||| |||| ||| |||  |||||||| ||  |||||||| ||||||||||   |||||||||||||    
T  6875599 taaatttataacttttcaataaataattgatattttccaataaaatattactatttttagttgttttaacatgtgcaatattgcaaatgttagacaaac 6875501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 9327009 - 9327047
Alignment:
Q  116 tttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  9327009 tttctttaacatatgcaatattgcatatgttagacaaac 9327047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 9373731 - 9373769
Alignment:
Q  116 tttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  9373731 tttctttaacatatgcaatattgcatatgttagacaaac 9373769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 9382043 - 9382081
Alignment:
Q  116 tttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  9382043 tttctttaacatatgcaatattgcatatgttagacaaac 9382081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 9759222 - 9759319
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||  ||||||||||| |  ||||||| |||| ||| || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  9759222 taaatatataactttttgttaaataattgttg-gtttcaataaaaacttgctacttttagttaccttaacatgtgcaatattgcacatgttagacaaac 9759319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 23545574 - 23545476
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||| ||||||| ||||||||||||| |||||||||  |||||||  || | ||| ||  |||||||| |||||| |||   |||||||||||||    
T  23545574 taaatataaaacttttgaataaataattgttgtttttcaagaaaaaattactactattagttgttttaacatgtgcaatgttgcacatgttagacaaac 23545476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 35645063 - 35645097
Alignment:
Q  9 agtttatgcattttatattaaatatataacctttt 43  Q
    |||||||||||||||||||||||||||||| ||||    
T  35645063 agtttatgcattttatattaaatatataacttttt 35645097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 49332431 - 49332333
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||| ||||||||||||||||||||||    ||||||||| |||| || ||| ||||| || | ||||||| || |||||||   |||||||||||||    
T  49332431 taaatttataactttttaataaataattaatatttttcaatgaaaagttattacttttaattaccttaacatgtgaaatattgcacatgttagacaaac 49332333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 50352400 - 50352303
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||  ||||||||||| |  ||||||| |||| ||| || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  50352400 taaatatataactttttgttaaataattgttg-gtttcaataaaaacttgctacttttagttaccttaacatgtgcaatattgcacatgttagacaaac 50352303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 53376493 - 53376535
Alignment:
Q  60 tatataactttttaataaataattgtagtttttcaatcaaaaa 102  Q
    |||||||||||||||||||| ||||| |||||||||| |||||    
T  53376493 tatataactttttaataaatgattgttgtttttcaataaaaaa 53376535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 4779516 - 4779561
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaa 101  Q
    ||||||||||| |||| ||||||||||||| |||||||||| ||||    
T  4779516 taaatatataatttttaaataaataattgttgtttttcaataaaaa 4779561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 10813587 - 10813656
Alignment:
Q  69 ttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattg 138  Q
    |||||| |||||||||| | |||||||| |||| || ||| ||||| || | ||||||||||||||||||    
T  10813587 ttttaacaaataattgttggttttcaataaaaagttattacttttagttgccttaacatatgcaatattg 10813656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 37784940 - 37785005
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctt 121  Q
    ||||||| |||||||||||||||| ||| | |||||||||| |||| ||| || ||||| ||||||    
T  37784940 taaatatgtaactttttaataaatgattattgtttttcaataaaaagttgctacttttagtttctt 37785005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 8736890 - 8736938
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaatt 104  Q
    ||||||| |||||||||||||||||| | | |||||||||| |||||||    
T  8736890 taaatatgtaactttttaataaataagttttgtttttcaataaaaaatt 8736938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 16069299 - 16069335
Alignment:
Q  68 tttttaataaataattgtagtttttcaatcaaaaatt 104  Q
    |||||||||||||||||| |||||||||| |||||||    
T  16069299 tttttaataaataattgttgtttttcaataaaaaatt 16069335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 16667464 - 16667512
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaatt 104  Q
    ||||||| || ||||||||||||||| ||| |||||||||| |||||||    
T  16667464 taaatatgtagctttttaataaataagtgttgtttttcaatgaaaaatt 16667512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 24297468 - 24297392
Alignment:
Q  58 aatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaat 134  Q
    |||||| ||||||| ||||||||||||| |||||||||  |||||||  || | ||| ||  |||||||||||||||    
T  24297468 aatataaaacttttaaataaataattgttgtttttcaaaaaaaaattactactattaattgttttaacatatgcaat 24297392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 29190909 - 29190977
Alignment:
Q  70 tttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattg 138  Q
    |||||| ||||||||| | |||||||| |||||||  || ||||| || | ||||||||||||||||||    
T  29190909 tttaatcaataattgttggttttcaatgaaaaattactacttttagttaccttaacatatgcaatattg 29190977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 39539562 - 39539514
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaatt 104  Q
    ||||||| || ||||||||||||||| ||| |||||||||| |||||||    
T  39539562 taaatatgtagctttttaataaataagtgttgtttttcaatgaaaaatt 39539514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 51070476 - 51070516
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaat 96  Q
    |||||||||||||||||||||||| ||||  ||||||||||    
T  51070476 taaatatataactttttaataaatgattggtgtttttcaat 51070516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 36490875 - 36490795
Alignment:
Q  58 aatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattg 138  Q
    |||||||||||||||||||||||||||| |||||||||| |||| ||  || ||||| || ||||||||| ||||||||||    
T  36490875 aatatataactttttaataaataattgttgtttttcaataaaaacttactacttttaattgctttaacatgtgcaatattg 36490795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 6520809 - 6520712
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| ||| |||||||||||||||||| |||||||||  |||| |||||| ||||| |||||||||| | || ||||||||  |||||||||||||    
T  6520809 taaatatttaattttttaataaataattgttgtttttcaa-gaaaagttgttacttttagtttctttaacctgtgtaatattgtacatgttagacaaac 6520712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 34050365 - 34050461
Alignment:
Q  58 aatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||||| ||||| |||||||||||| |||||||||| | || |||||| ||||  || ||||||||| ||||||||||   |||||||||||||    
T  34050365 aatatataattttttgataaataattgttgtttttcaataataatttgttacttttggttgctttaacatgtgcaatattgcacatgttagacaaac 34050461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 23591796 - 23591698
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||||||||||||| | | |||||||| |||| ||  || ||||| || ||||||||| |||||| |||   |||||||||||||    
T  23591796 taaatatataactttttaataaataattattgattttcaataaaaacttactaattttagttgctttaacatgtgcaatgttgcacatgttagacaaac 23591698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 39627651 - 39627749
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| |||||||| ||||| | ||||| |||||||||| |||| ||| |||||||| |||| ||||||| || |||||||   |||||||||||||    
T  39627651 taaatatgtaacttttcaataagtgattgttgtttttcaattaaaagttgctatttttagtttccttaacatgtgtaatattgcacatgttagacaaac 39627749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 11744917 - 11744990
Alignment:
Q  65 aactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattg 138  Q
    ||||||||||||||||||||| |||||||||| |||| ||  || ||||| |||||||||||| ||||| ||||    
T  11744917 aactttttaataaataattgttgtttttcaataaaaagtttatacttttaatttctttaacatgtgcaacattg 11744990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 1502800 - 1502897
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||  ||||||||||| | |||||||| |||| ||| || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  1502800 taaatatataactttttgttaaataattgttg-ttttcaataaaaatttgctacttttagttaccttaacatgtgcaatattgcacatgttagacaaac 1502897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 23576494 - 23576591
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||  ||||||||||| | ||| |||| |||| |||||| ||||| || | ||||||| ||||||||||   |||||||||||||    
T  23576494 taaatatataactttttgttaaataattgttggttt-caataaaaacttgttacttttagttaccttaacatgtgcaatattgcagatgttagacaaac 23576591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 313835 - 313750
Alignment:
Q  69 ttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| ||||||||| | ||||||||||||||||  || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  313835 ttttaatcaataattgttggttttcaatcaaaaattactacttttagttaccttaacatgtgcaatattgcacatgttagacaaac 313750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 9516679 - 9516634
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaa 101  Q
    |||||||||||||||||||||||||||||  |||||||||| ||||    
T  9516679 taaatatataactttttaataaataattggtgtttttcaatgaaaa 9516634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 30109088 - 30109157
Alignment:
Q  58 aatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacat 127  Q
    |||||| ||||||||||||||||||||| ||||||  ||  ||||||| || ||||| ||||||||||||    
T  30109088 aatatacaactttttaataaataattgttgttttttcatataaaattgctacttttagtttctttaacat 30109157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 6307599 - 6307503
Alignment:
Q  58 aatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||||| |||||||||||||||||| ||||| |||| || | |||    ||||| || |||||||||||||||| |||   |||||||||||||    
T  6307599 aatatataaatttttaataaataattgttgttttccaataaatagttgccgcttttagttactttaacatatgcaattttgcacatgttagacaaac 6307503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 25956747 - 25956665
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattg 138  Q
    |||||||| ||||||| ||||||||||||| |||||||||  |||| || ||||| ||| ||  ||||| || ||||||||||    
T  25956747 taaatataaaacttttaaataaataattgttgtttttcaagaaaaagttattattattagttgttttaatatgtgcaatattg 25956665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 39150407 - 39150504
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| |||||||| ||||||||||||| | |||||||| |||| ||  || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  39150407 taaatatgtaactttt-aataaataattgttggttttcaatgaaaagttactacttttagttgccttaacatgtgcaatattgcacatgttagacaaac 39150504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 19277878 - 19277841
Alignment:
Q  64 taactttttaataaataattgtagtttttcaatcaaaa 101  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  19277878 taactttttaataaataattgttgtttttcaataaaaa 19277841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 25465255 - 25465175
Alignment:
Q  57 aaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattg 138  Q
    |||||| ||||||||| |||||||||||| |||| ||||| |||| ||| || ||||| |  ||||||||| ||||||||||    
T  25465255 aaatatttaactttttgataaataattgttgtttctcaat-aaaagttgctacttttagtgactttaacatgtgcaatattg 25465175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 85
Target Start/End: Original strand, 33048192 - 33048221
Alignment:
Q  56 taaatatataactttttaataaataattgt 85  Q
    ||||||||||||||||||||||||||||||    
T  33048192 taaatatataactttttaataaataattgt 33048221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 35438813 - 35438768
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaa 101  Q
    ||||||||||||||||||||||| |||||  |||||||||| ||||    
T  35438813 taaatatataactttttaataaacaattggtgtttttcaattaaaa 35438768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 51920511 - 51920559
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaatt 104  Q
    |||||||| ||||||| ||||||||||||| |||||||||  |||||||    
T  51920511 taaatataaaacttttgaataaataattgttgtttttcaaaaaaaaatt 51920559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 15411702 - 15411800
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| || ||||||||||||| ||||| |||||||||| |||||||  || ||||| || ||||||||| ||||||||||   |||||||||||||    
T  15411702 taaatatgtagctttttaataaattattgttgtttttcaataaaaaattactacttttagttactttaacatgtgcaatattgcacatgttagacaaac 15411800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 20566097 - 20566192
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagaca 151  Q
    |||||| ||||  ||||||||||||||||| |||||||||| || | ||| |||||||| || ||||||||| ||||||||||   ||||||||||    
T  20566097 taaatagataatattttaataaataattgttgtttttcaataaatagttgctatttttagttactttaacatgtgcaatattgcacatgttagaca 20566192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 9450355 - 9450273
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattg 138  Q
    ||||||||||| |||||||||||||||||| |||||||||| || | || |||||||||  | |||||| || ||||||||||    
T  9450355 taaatatataattttttaataaataattgttgtttttcaataaatagtttttatttttaactactttaagatgtgcaatattg 9450273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 23932659 - 23932565
Alignment:
Q  60 tatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||| |||||||||||||||||||||  |||||||||  ||| ||  |||||||| || ||||||||| ||||||||||   |||||||||||||    
T  23932659 tataaaactttttaataaataattgttctttttcaatgtaaagttactatttttagttcctttaacatgtgcaatattgcacatgttagacaaac 23932565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 27865895 - 27865992
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||||| | |||||||||| | ||||| |||||||||| ||||||| ||| ||||| ||||||||||||||||||  |||   |||||||||||||    
T  27865895 taaatatatcagtttttaataattgattgttgtttttcaat-aaaaattattacttttagtttctttaacatatgcaacgttgctcatgttagacaaac 27865992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 34817641 - 34817544
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||||||||||||||| | |||||||| || | ||| |||||||| ||  ||||| |  ||||||||||  ||||||||||||||    
T  34817641 taaatatataactttttaataaataattgttg-ttttcaataaatagttgatatttttagttattttaatacgtgcaatattgcatatgttagacaaac 34817544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 2051712 - 2051631
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatatt 137  Q
    ||||||| ||| |||||||||||||||||| |||||||||| |||| ||| || ||||| ||  |||||||||| |||||||    
T  2051712 taaatatttaaatttttaataaataattgttgtttttcaataaaaacttgctaattttagttgttttaacatatacaatatt 2051631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 34214032 - 34214129
Alignment:
Q  57 aaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||  |||||||||| | |||||||| |||| ||  |||||||| || ||||||||| |||| |||| |  |||||||||||||    
T  34214032 aaatatataactttttataaaataattgttggttttcaataaaaacttactatttttagttgctttaacatgtgcagtattatacatgttagacaaac 34214129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 25998082 - 25998161
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaata 135  Q
    ||||||| || ||||||||||||||||||| |||||||||| |||| || | | ||||| || ||||||||| |||||||    
T  25998082 taaatatgtatctttttaataaataattgttgtttttcaataaaaagttttcacttttagttactttaacatgtgcaata 25998161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 39367150 - 39367059
Alignment:
Q  63 ataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||||||||||||||||| | | |||||||| |||  |||||| ||||| || |||||||||| | |||  |||  |||||||||||||    
T  39367150 ataactttttaataaataattattgattttcaataaaattttgttaattttagttgctttaacatacgtaatggtgtacatgttagacaaac 39367059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 43388857 - 43388928
Alignment:
Q  67 ctttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattg 138  Q
    ||||||||||||||||||| | |||||||| |||||||  || ||||| || |||||| || ||||||||||    
T  43388857 ctttttaataaataattgttgattttcaataaaaaatttctacttttagttgctttaagatgtgcaatattg 43388928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 5583638 - 5583735
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||  ||||||||||| |  ||||||| |||| ||| || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  5583638 taaatatataactttttgttaaataattgttg-gtttcaataaaaacttgctacttttagttaccttaacatgtgcaatattgcacatgttagacaaac 5583735  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 27665124 - 27665221
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| |||||||| ||||||||||||| | |||||||| |||| ||  || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  27665124 taaatatgtaactttt-aataaataattgttggttttcaatgaaaagttactacttttagttgccttaacatgtgcaatattgcacatgttagacaaac 27665221  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 40503061 - 40503119
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttattttta 114  Q
    |||||||||||||||||  ||||||||||| | |||||||| |||| |||||| |||||    
T  40503061 taaatatataactttttgttaaataattgttggttttcaataaaaacttgttactttta 40503119  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 45302438 - 45302340
Alignment:
Q  56 taaatatataactttttaataaataattgtag-tttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaa 153  Q
    ||||||||||| |||||||||||||||| | | ||||| ||| |||| || ||| ||||  |||||||||||| || | ||||||  ||||||||||||    
T  45302438 taaatatataattttttaataaataattattgtttttttaataaaaacttattactttttgtttctttaacatgtgtattattgtacatgttagacaaa 45302340  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 5853543 - 5853588
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaa 101  Q
    ||||||||||| |||| ||||||||||||| |||||||||| ||||    
T  5853543 taaatatataatttttaaataaataattgttgtttttcaataaaaa 5853588  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 16126651 - 16126736
Alignment:
Q  69 ttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| ||||||||| | |||||||| |||||||  || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  16126651 ttttaatcaataattgttggttttcaatgaaaaattactacttttagttaccttaacatgtgcaatattgcacatgttagacaaac 16126736  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 16493612 - 16493657
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaa 101  Q
    ||||||||||| |||| ||||||||||||| |||||||||| ||||    
T  16493612 taaatatataatttttaaataaataattgttgtttttcaataaaaa 16493657  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 22704635 - 22704590
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaa 101  Q
    ||||||||||| |||| ||||||||||||| |||||||||| ||||    
T  22704635 taaatatataatttttaaataaataattgttgtttttcaataaaaa 22704590  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 25948137 - 25948092
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaa 101  Q
    ||||||||||| |||| ||||||||||||| |||||||||| ||||    
T  25948137 taaatatataatttttaaataaataattgttgtttttcaataaaaa 25948092  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 28629976 - 28629894
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgt 139  Q
    ||||||| |||||||| ||||||||||||| | |||||||| |||| || ||||||||| || ||||||||| |||||||||||    
T  28629976 taaatatgtaactttt-aataaataattgttggttttcaatgaaaagttattatttttagttgctttaacatgtgcaatattgt 28629894  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 5958203 - 5958301
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| ||| |||||||||| ||||||| | |||||||| |||||||  || ||||| |||||||||||| || |||||||   |||||||||||||    
T  5958203 taaatatgtaaatttttaataattaattgttgattttcaatgaaaaattactacttttagtttctttaacatgtgtaatattgcacatgttagacaaac 5958301  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 11636830 - 11636732
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| ||| |||||||||| ||||||| | |||||||| |||| ||  || ||||| |||||||||||| ||||||||||   |||||||||||||    
T  11636830 taaatatgtaaatttttaataattaattgttggttttcaatgaaaagttactacttttagtttctttaacatgtgcaatattgcacatgttagacaaac 11636732  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 40166380 - 40166328
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgtta 108  Q
    ||||||||||||||||| |||||||||||| |||||||||| |||| ||||||    
T  40166380 taaatatataactttttgataaataattgttgtttttcaataaaaacttgtta 40166328  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 315441 - 315342
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttc-tttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||| |||||||||||||||||| || | | ||||||||||||||||  |||||||| || | ||||| ||||| ||||||||  ||||| |||||||    
T  315441 taaatacataactttttaataaatatttatggattttcaatcaaaaattactatttttagttgcttttaatatatgtaatattgtacatgtttgacaaac 315342  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 15241030 - 15241070
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaat 96  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  15241030 taaatatataattttttaataaataattgttgtttttcaat 15241070  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 15190970 - 15190873
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| |||||||| ||| |||||||||   |||||||| |||||||  || ||||| || | ||||||||||||||||||   |||||||||||||    
T  15190970 taaatatgtaactttt-aatcaataattgtttgttttcaatgaaaaattactacttttacttaccttaacatatgcaatattgcacatgttagacaaac 15190873  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 30839879 - 30839782
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||  ||||||||||| |  ||||||| |||| ||| || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  30839879 taaatatataactttttgttaaataattgttg-gtttcaataaaaacttgctacttttagttaccttaacatgtgcaatattgcacatgttagacaaac 30839782  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 36597677 - 36597580
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||||||||||||||  ||||||||||| |  ||||||| |||| ||| || ||||| || | ||||||| ||||||||||   |||||||||||||    
T  36597677 taaatatataactttttgttaaataattgttg-gtttcaataaaaatttgctacttttagttaccttaacatgtgcaatattgcacatgttagacaaac 36597580  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 4047498 - 4047413
Alignment:
Q  69 ttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| || |||||| | |||||||| |||| ||  || ||||| || | ||||||||||||||||||| ||||||||| ||||    
T  4047498 ttttaatcaacaattgttggttttcaatgaaaagttactacttttagttaccttaacatatgcaatattgtatatgttagataaac 4047413  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 15241225 - 15241270
Alignment:
Q  109 tttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    |||||| |||||||||||| ||||||||||  ||||||||||||||    
T  15241225 tttttagtttctttaacatgtgcaatattgcatatgttagacaaac 15241270  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 11264687 - 11264647
Alignment:
Q  61 atataactttttaataaataattgtagtttttcaatcaaaa 101  Q
    |||||||||||||||||||||||||  ||||||||| ||||    
T  11264687 atataactttttaataaataattgttctttttcaataaaaa 11264647  T

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Target: scaffold0073 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 16616 - 16712
Alignment:
Q  58 aatatataactttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||||| |||||||||||||||||| ||||| |||| || | |||    ||||| || |||||||||||||||| |||   |||||||||||||    
T  16616 aatatataaatttttaataaataattgttgttttccaataaatagttgccgcttttagttactttaacatatgcaattttgcaaatgttagacaaac 16712  T

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Target: scaffold0305 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 17868 - 17946
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaattgttattttta-ttttctttaacatatgcaa 133  Q
    |||| |||||| ||||||||||||||||||  ||||||||| |||  |||||| ||||| ||| ||||||||| |||||    
T  17868 taaagatataaatttttaataaataattgttatttttcaataaaagcttgttacttttagtttgctttaacatgtgcaa 17946  T

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Target: scaffold0305; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 18076 - 18112
Alignment:
Q  56 taaatatataactttttaataaataattgtagttttt 92  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  18076 taaatatataactttctaataaataattgttgttttt 18112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 22562 - 22516
Alignment:
Q  56 taaatatataactttttaataaataattgtagtttttcaatcaaaaa 102  Q
    |||||||||| ||||||||||||||||||  |||||||||| |||||    
T  22562 taaatatatagctttttaataaataattgatgtttttcaataaaaaa 22516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 13171 - 13086
Alignment:
Q  69 ttttaataaataattgtagtttttcaatcaaaaattgttatttttattttctttaacatatgcaatattgtgtatgttagacaaac 154  Q
    ||||||| || |||||| | |||||||| |||||||  || ||||| || | ||||||||||||||||||   |||||||||||||    
T  13171 ttttaatcaacaattgttggttttcaatgaaaaattactacttttagttaccttaacatatgcaatattgcacatgttagacaaac 13086  T

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