View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6593_high_8 (Length: 345)
Name: NF6593_high_8
Description: NF6593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6593_high_8 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 345
Target Start/End: Complemental strand, 47428877 - 47428545
Alignment:
| Q |
14 |
atatataggaaactctaggagggtggcaaatggctttaacaggaaaagcccttgcaggccaaagccaataacaaatagtcaaagcagcacaagaacacaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428877 |
atatataggaaactctaggagggtggcaaatggctttaacaggaaaagcccttgcaggccaaagccaataacaaatagtcaaagcagcacaagaacacaa |
47428778 |
T |
|
| Q |
114 |
aatgagcattattaaacaagtatagaagaatgagacatatataatgcatgttatgtaac-agattaaatctaacatatgaacaaaactatatctcttacg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428777 |
aatgagcattattaaacaagtatagaagaatgagacatatataatgcatgttatgtaacaagattaaatctaacatatgaacaaaactatatctcttacg |
47428678 |
T |
|
| Q |
213 |
cgtatttattattttgatattatagccttagcatttgttactcttcctgtttagttactaagtcctattaaaccagtaagtagaattttggaaggtgaga |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428677 |
cgtatttattattttgatattatagccttagcatttgttactcttcctgtttagttactaaatcctattaaaccagtaagtagaattttggaaggtgaga |
47428578 |
T |
|
| Q |
313 |
aggnnnnnnnntggggaaggcaagcaaatggat |
345 |
Q |
| |
|
||| |||||||||||||||||||||| |
|
|
| T |
47428577 |
aggaaaaaaaatggggaaggcaagcaaatggat |
47428545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University