View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6593_low_13 (Length: 252)
Name: NF6593_low_13
Description: NF6593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6593_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 38701305 - 38701474
Alignment:
| Q |
1 |
aacacagtaggacacatcgattcaaacacccaaatcgtaatacccaaagcttccatcgaaattccaaaaccctcaaaaccttcatctttgaatccagtaa |
100 |
Q |
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| T |
38701305 |
aacacagtaggacacatcgattcaaacacccaaatcgaaatacccaaagcttcaattgaaattccaaaaccctcaaaaccttcatctttgaatccagtaa |
38701404 |
T |
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| Q |
101 |
aagtttcttcggatctcatattctctgcactttctaccttcacaaatttccctgccggtattgccataat |
170 |
Q |
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| T |
38701405 |
aagtttcttcggatctcatattctctgcactttctaccttcacaaatttccctgccggtattgccataat |
38701474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 38701503 - 38701536
Alignment:
| Q |
201 |
atttgtttaatttcacgaagcttgtatatgaagt |
234 |
Q |
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| T |
38701503 |
atttgtttaatttcacgaagcttgtatatgaagt |
38701536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 48506288 - 48506243
Alignment:
| Q |
102 |
agtttcttcggatctcatattctctgcactttctaccttcacaaat |
147 |
Q |
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| T |
48506288 |
agtttgttcggatctcacattctctacactttcttccttcacaaat |
48506243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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