View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6593_low_15 (Length: 245)
Name: NF6593_low_15
Description: NF6593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6593_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 402803 - 402574
Alignment:
| Q |
1 |
ttttcgcaatcaagtttcctgtagtacttttcttgtcgggaaagaaacaattaaccaagcttatttgttgcttgcaaaaactttcatgcaaaactattgg |
100 |
Q |
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| T |
402803 |
ttttcgcaatcaagtttcttgtagtacttttcttgcagggaaagaaacaattaaccaagcttatttgttgcttgcaaaaactttcatgcaaaactattgg |
402704 |
T |
|
| Q |
101 |
caaaagcaccggctgcagttctttgctgtctttatttatcaatgcactcaaacttaatatttatgtatgaatcaggtttgaaatgaatggtcctcttcgt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
402703 |
caaaagcaccagctgcagttctttgctgtctttatttatcaatgcactcaaacttaatatttatgtatgaatcaggtttgaaatgaatggtcctcttcgt |
402604 |
T |
|
| Q |
201 |
ttgcagaacctggtaccagaattagaagtg |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
402603 |
ttgcagaacctggtaccagaattagaagtg |
402574 |
T |
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