View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6593_low_16 (Length: 244)
Name: NF6593_low_16
Description: NF6593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6593_low_16 |
 | |
|
| [»] scaffold0185 (1 HSPs) |
| | |
|
| [»] scaffold0048 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0185 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 7173 - 6949
Alignment:
| Q |
1 |
tagtttcccaaaaaacaccgtaaatactaagcttatgagaaccaaagaaattgcataaaactcaaaattcttttgtttctctaatattggtcttcctcga |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
7173 |
tagtttcccaaaacacaccgtaaatactaagcttatgagaaccaaccacattgcataaaactcaaacttcttttgcttctctaatattgcgcttcctcgg |
7074 |
T |
|
| Q |
101 |
agaggttctttctcatgttttgctttggtggacatgatctttgattgtgataactttggactgtctgaagataaacttgtcaaagacgattgagtggcgt |
200 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||| |||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||| | |
|
|
| T |
7073 |
ctagtttctttctcatgttttcctttggtggacattttctttggttgtgataactttggactatctgaagataaagttgtcaaagacgattgagtggctt |
6974 |
T |
|
| Q |
201 |
tggttactttcttatacgtcgaata |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
6973 |
tggttactttcttatacgtcgaata |
6949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 85322 - 85546
Alignment:
| Q |
1 |
tagtttcccaaaaaacaccgtaaatactaagcttatgagaaccaaagaaattgcataaaactcaaaattcttttgtttctctaatattggtcttcctcga |
100 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||| ||||||||| |||||||||||||||||||||| ||| || | |
|
|
| T |
85322 |
tagtttcccgaaaaacacagtaaatactaagcttattagaaccaaacaaattgcacgaaactcaaacttcttttgtttctctaatattgcgctttcttgt |
85421 |
T |
|
| Q |
101 |
agaggttctttctcatgttttgctttggtggacatgatctttgattgtgataactttggactgtctgaagataaacttgtcaaagacgattgagtggcgt |
200 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||| ||||||||||||||| | ||| | | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
85422 |
ttagtttctttctcatgttttcctttggtggacatgttctttgattgtgataccgttgaattatctgaagataaacttgtcaaagacgattgagtggcgt |
85521 |
T |
|
| Q |
201 |
tggttactttcttatacgtcgaata |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
85522 |
tggttactttcttatacgtcgaata |
85546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 47912 - 47688
Alignment:
| Q |
1 |
tagtttcccaaaaaacaccgtaaatactaagcttatgagaaccaaagaaattgcataaaactcaaaattcttttgtttctctaatattggtcttcctcga |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||| ||||||||| ||||||| |||||||||||||| |||| ||| |
|
|
| T |
47912 |
tagtttcccaaaaaacaccataaatactaatcttatgagaaccaaacaaattgcatgaaactcaaacttcttttatttctctaatattgcgcttcttcgg |
47813 |
T |
|
| Q |
101 |
agaggttctttctcatgttttgctttggtggacatgatctttgattgtgataactttggactgtctgaagataaacttgtcaaagacgattgagtggcgt |
200 |
Q |
| |
|
|| ||||||||||||||| ||||||||||| |||||||||||||||||| ||||| ||| |||||||||||| ||| |||||||||||| || || | |
|
|
| T |
47812 |
ctagtatctttctcatgttttcctttggtggacgtgatctttgattgtgatacctttgaactatctgaagataaagttgacaaagacgattgcgtagctt |
47713 |
T |
|
| Q |
201 |
tggttactttcttatacgtcgaata |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
47712 |
tggttactttcttatacgtcgaata |
47688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 60513 - 60292
Alignment:
| Q |
4 |
tttcccaaaaaacaccgtaaatactaagcttatgagaaccaaagaaattgcataaaactcaaaattcttttgtttctctaatattggtcttcctcgaaga |
103 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| | |
|
|
| T |
60513 |
tttcccaaaaaacacagtaaatactaagcttatgagtaccaaagaaattgcataaaactcaaaattcttttgcttctctattattgtgcttcctcggcaa |
60414 |
T |
|
| Q |
104 |
ggttctttctcatgttttgctttggtggacatgatctttgattgtgataactttggactgtctgaagataaacttgtcaaagacgattgagtggcgttgg |
203 |
Q |
| |
|
| |||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||| |||||||||| | |||||||||||||| ||| || |||| |
|
|
| T |
60413 |
gtatctttctcttgttttcctttggtggacatgatctttgattgtgatacctttgaactatctgaagatatagctgtcaaagacgattcagtagctttgg |
60314 |
T |
|
| Q |
204 |
ttactttcttatacgtcgaata |
225 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
60313 |
ctactttcttatacgttgaata |
60292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University