View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6593_low_2 (Length: 561)
Name: NF6593_low_2
Description: NF6593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6593_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 7 - 547
Target Start/End: Complemental strand, 45648843 - 45648303
Alignment:
| Q |
7 |
agattattcttaagcacaattacaagatttaacaaactccttttaaagggcacaacaataccaatttgtaatcattcaaatttgttatttgaatctacag |
106 |
Q |
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| T |
45648843 |
agattattcttaagcacagttacaagatttaacaaactccttttaaagggcacaacaataccaatttgtaatcattcaaatttgttatttgaatctacag |
45648744 |
T |
|
| Q |
107 |
ttaaaagagaaaaattaacaaccgaaaatgatcaacaaccagatcataccaaactgccattatcgtctgcttaaagtgaaagagacttcacctcatctac |
206 |
Q |
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| T |
45648743 |
ttaaaagagaaaaattaacaaccgaaaatgatcaacaaccagatcataccaaaccgccattatcgtctgcttaaagtgcaagagacttcacctcatctac |
45648644 |
T |
|
| Q |
207 |
tttccaaaatccttcctcgtacttgtaccacctaactatcccttcatcagttcttgtacgttggcacatgatgcacgagtcatccatgcatgtgataaat |
306 |
Q |
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| T |
45648643 |
tttccaaaatccttcctcgtacttgtaccacctaattatcccttcatcagttcttgtacgttggcacatgatgcacgagtcatccatgcatgtgataaat |
45648544 |
T |
|
| Q |
307 |
tcgcgcaatcgagaagccttttggcgaatagtagaatcaatttcattgataannnnnnnatagtgaggaggggggagaccttccattagaatgcaatgtg |
406 |
Q |
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| T |
45648543 |
tcgcgcaatcgagaagccttttggcgaatagtagaatcaatttcattgataatttttttatagtgaggaggggggagaccttccattagaatgcaatgtg |
45648444 |
T |
|
| Q |
407 |
atatgttgagcacttctaaatgttctaagctgtctaggatgaaaatgagaacatctctgtatagggttgagcaccgaaggctcaagactctcaattttgg |
506 |
Q |
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| T |
45648443 |
atatgttgagcacttctaaatgttctaagctgtctaggatgaaaatgagaacatctctgtatagggttgagcaccgaaggctcaagactctcaattttgg |
45648344 |
T |
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| Q |
507 |
aaaatatgtagcaagaattgaagcaaagaagatgttacatg |
547 |
Q |
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| T |
45648343 |
aaaatatgtagcaagaattgaagcaaagaagatgttacatg |
45648303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 547
Target Start/End: Complemental strand, 45643810 - 45643284
Alignment:
| Q |
10 |
ttattcttaagcacaattacaagatttaacaaactccttttaaagggcacaacaataccaatttgtaatcattcaaatttgttatttgaatctacagtta |
109 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45643810 |
ttattcttatgcacagttacaagatttaacaaactccttttaaagggcacaacaacaccaatttgtaatcattcaaatttgttatttgaatctacaatta |
45643711 |
T |
|
| Q |
110 |
aaagagaaaaattaacaaccgaaaatgatcaacaaccagatcataccaaactgccattatcgtctgcttaaagtgaaagagacttcacctcatctacttt |
209 |
Q |
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| T |
45643710 |
aaaga-aaaacttaacaaccgaaaatgttcaacaaccagatc----------gcagttattgtctgcttagagtgcaagagacttcacctcatcttcttt |
45643622 |
T |
|
| Q |
210 |
ccaaaatccttcctcgtacttgtaccacctaactatcccttcatcagttcttgtacgttggcacatgatgcacgagtcatccatgcatgtgataaattcg |
309 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45643621 |
ccaaaatccttcctcatacttgtaccacctaactatcccttcatcagttcttgtacgttggcacatgatacacgagtcatccatgcatgtgataaattcg |
45643522 |
T |
|
| Q |
310 |
cgcaatcgagaagccttttggcgaatagtagaatcaatttcattgataannnnnnnatagtgaggaggggggagaccttccattagaatgcaatgtgata |
409 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||| |
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| T |
45643521 |
cgcaatcgagaagccttctggcggatagtagaatcaatttcattgataatttttttatgttgaggaggggggagacattccattagaatgcaatgtgata |
45643422 |
T |
|
| Q |
410 |
tgttgagcacttctaaatgttctaagctgtctaggatgaaaatgagaacatctctgtatagggttgagcaccgaaggctcaagactctcaattttggaaa |
509 |
Q |
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| ||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| ||||| |||||||||||||||| |||||||||||||| |
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| T |
45643421 |
tattgagcacttctaaatgttctaagctgtctaggatgagaatgagaacatccctatatagcgttgaacaccgaaggctcaagaatctcaattttggaac |
45643322 |
T |
|
| Q |
510 |
atatgtagcaagaattgaagcaaagaagatgttacatg |
547 |
Q |
| |
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| ||| ||||||| |||||||||||||||||| ||||| |
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| T |
45643321 |
aaatgcagcaagagttgaagcaaagaagatgtcacatg |
45643284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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