View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6593_low_3 (Length: 529)
Name: NF6593_low_3
Description: NF6593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6593_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 19 - 524
Target Start/End: Complemental strand, 43639865 - 43639360
Alignment:
| Q |
19 |
aagaaggtgttaagggtttagtagaaggtgggtgtcctccaagttttgtaatcattgatgatggttggcaaaatttttgtcgtgatgatgaagatttttt |
118 |
Q |
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| T |
43639865 |
aagaaggtgttaagggtttagtagaaggtgggtgtcctccaagttttgtaatcattgatgatggttggcaaaatttttgtcgtgatgatgaagatttttt |
43639766 |
T |
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| Q |
119 |
gaacggtggtgattgtttaagtttgaattgttctatacctggtgaacaaatgttgggaaggttaataagttttgaagaaaataaaaaatttaaggaatat |
218 |
Q |
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| T |
43639765 |
gaacggtggtgattgtttaagtttgaattgttctatacctggcgaacaaatgttgggaaggttaataagttttgaagaaaataaaaaatttaaggaatat |
43639666 |
T |
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| Q |
219 |
gatgaatctttaggtatgggtgggtttgtgagggatttaaaggaggaatttaggggtttattaaaggaggtttatgtgtggcatgctttttgtgggtatt |
318 |
Q |
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| T |
43639665 |
gatgaatctttaggtatgggtgggtttgtgagggatttaaaggaggaatttaggggtttattaaaggaggtttatgtgtggcatgctttttgtgggtatt |
43639566 |
T |
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| Q |
319 |
ggggtgggattaggcctaatgttgaagggatgccagagtcggtggttgtgccggcgaagttgtcaccggaggctgagaggtgtatgacggatttggcggt |
418 |
Q |
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| T |
43639565 |
ggggtgggattaggcctaatgttgaagggatgccagagtcggtgataatgccggcgaagttgtcaccgggggctgagaggtgtatgacggatttggcggt |
43639466 |
T |
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| Q |
419 |
ggtgaagataatggagatcggagttggattggtgaagccagaagaggcatgtcggttgtatgatggacttcattctcatttgaaatctgttggtattgat |
518 |
Q |
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| T |
43639465 |
ggtgaagataatggagatcggagttggattggtgaagccagaagaggcatgccggttgtatgatggacttcattctcatttgaaatctgttggtattgat |
43639366 |
T |
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| Q |
519 |
gatgtc |
524 |
Q |
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| |||| |
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| T |
43639365 |
ggtgtc |
43639360 |
T |
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Back To:
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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 343
Target Start/End: Original strand, 486766 - 486818
Alignment:
| Q |
291 |
tatgtgtggcatgctttttgtgggtattggggtgggattaggcctaatgttga |
343 |
Q |
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| T |
486766 |
tatgtgtggcatgctttatgtggttattggggtgggataagacctaatgttga |
486818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 34698263 - 34698214
Alignment:
| Q |
288 |
gtttatgtgtggcatgctttttgtgggtattggggtgggattaggcctaa |
337 |
Q |
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| T |
34698263 |
gtttatgtttggcatgcactttgtgggtattggggtggggttagacctaa |
34698214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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