View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6593_low_6 (Length: 422)

Name: NF6593_low_6
Description: NF6593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6593_low_6
NF6593_low_6
[»] chr1 (7 HSPs)
chr1 (19-134)||(50541732-50541849)
chr1 (156-290)||(50541552-50541685)
chr1 (288-358)||(50540671-50540741)
chr1 (382-422)||(48843981-48844021)
chr1 (382-422)||(51247855-51247895)
chr1 (393-422)||(27817023-27817052)
chr1 (393-422)||(49534415-49534444)
[»] chr3 (4 HSPs)
chr3 (382-422)||(29343012-29343052)
chr3 (385-422)||(43658914-43658951)
chr3 (389-422)||(38575055-38575088)
chr3 (394-422)||(48218630-48218658)
[»] chr8 (3 HSPs)
chr8 (382-422)||(4374320-4374360)
chr8 (393-422)||(30115405-30115434)
chr8 (393-422)||(36848216-36848245)
[»] chr5 (2 HSPs)
chr5 (382-422)||(3739027-3739067)
chr5 (386-422)||(42408584-42408620)
[»] chr4 (5 HSPs)
chr4 (382-422)||(48781509-48781549)
chr4 (393-422)||(2713862-2713891)
chr4 (393-422)||(20422750-20422779)
chr4 (393-422)||(31876826-31876855)
chr4 (393-422)||(36944648-36944677)
[»] scaffold1095 (1 HSPs)
scaffold1095 (393-422)||(1523-1552)
[»] chr7 (3 HSPs)
chr7 (389-422)||(32499283-32499316)
chr7 (393-422)||(47814009-47814038)
chr7 (394-422)||(46732606-46732634)
[»] chr2 (3 HSPs)
chr2 (393-422)||(3595914-3595943)
chr2 (393-422)||(20244190-20244219)
chr2 (393-422)||(30161971-30162000)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 50541849 - 50541732
Alignment:
Q  19 agtatttatagctatagataagccagtcgtaaagagaaaatggtagtaagaaggcaggtttctgactc--tttcttttatcctttttaatgattcacaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  50541849 agtatttatagctatagataagccagtcgtaaagagaaaatggtagtaagaaggcaggtttctgactctttttcttttatcctttttaatgattcacaaa 50541750  T
Q  117 ggactcctttcgcattct 134  Q
    ||||||||||||||||||    
T  50541749 ggactcctttcgcattct 50541732  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 156 - 290
Target Start/End: Complemental strand, 50541685 - 50541552
Alignment:
Q  156 taataaggaaaatagttcaaattgaaagatcttattataagtgaatttcatcaaatctcatatacttaaaagtttaattttgatgtaatatccatgcaan 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  50541685 taataaggaaaatagttcaaattgaaagatcttattataagtgaatttcatcaaatctcatgtacttaaaagtttaattttgatgtaatatccatgcaa- 50541587  T
Q  256 nnnnnnngcactacagacaaatcagagattatatc 290  Q
           ||||||||||||||||| ||||||||||    
T  50541586 tttttttgcactacagacaaatcatagattatatc 50541552  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 288 - 358
Target Start/End: Complemental strand, 50540741 - 50540671
Alignment:
Q  288 atcatctacaactcttaacataaccatgagtgaagtacaatgttatcaaagagtcgtgtcatgctattctc 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50540741 atcatctacaactcttaacataaccatgagtgaagtacaatgttatcaaagagtcgtgtcatgctattctc 50540671  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 48844021 - 48843981
Alignment:
Q  382 gtggcatttcacatggaaaagttggattcaatgattagatt 422  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  48844021 gtggcatttcacatgggaaagttggattcaatgattagatt 48843981  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 51247855 - 51247895
Alignment:
Q  382 gtggcatttcacatggaaaagttggattcaatgattagatt 422  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  51247855 gtggcatttcacatggaaaaattggattcaatgattagatt 51247895  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 393 - 422
Target Start/End: Complemental strand, 27817052 - 27817023
Alignment:
Q  393 catggaaaagttggattcaatgattagatt 422  Q
    ||||||||||||||||||||||||||||||    
T  27817052 catggaaaagttggattcaatgattagatt 27817023  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 393 - 422
Target Start/End: Complemental strand, 49534444 - 49534415
Alignment:
Q  393 catggaaaagttggattcaatgattagatt 422  Q
    ||||||||||||||||||||||||||||||    
T  49534444 catggaaaagttggattcaatgattagatt 49534415  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 29343052 - 29343012
Alignment:
Q  382 gtggcatttcacatggaaaagttggattcaatgattagatt 422  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29343052 gtggcatttcacatggaaaagttggattcaatgattagatt 29343012  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 385 - 422
Target Start/End: Complemental strand, 43658951 - 43658914
Alignment:
Q  385 gcatttcacatggaaaagttggattcaatgattagatt 422  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  43658951 gcatttcacatgggaaagttggattcaatgattagatt 43658914  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 389 - 422
Target Start/End: Original strand, 38575055 - 38575088
Alignment:
Q  389 ttcacatggaaaagttggattcaatgattagatt 422  Q
    ||||||||| ||||||||||||||||||||||||    
T  38575055 ttcacatgggaaagttggattcaatgattagatt 38575088  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 422
Target Start/End: Original strand, 48218630 - 48218658
Alignment:
Q  394 atggaaaagttggattcaatgattagatt 422  Q
    |||||||||||||||||||||||||||||    
T  48218630 atggaaaagttggattcaatgattagatt 48218658  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 4374360 - 4374320
Alignment:
Q  382 gtggcatttcacatggaaaagttggattcaatgattagatt 422  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  4374360 gtggcatttcacatgggaaagttggattcaatgattagatt 4374320  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 393 - 422
Target Start/End: Original strand, 30115405 - 30115434
Alignment:
Q  393 catggaaaagttggattcaatgattagatt 422  Q
    ||||||||||||||||||||||||||||||    
T  30115405 catggaaaagttggattcaatgattagatt 30115434  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 393 - 422
Target Start/End: Complemental strand, 36848245 - 36848216
Alignment:
Q  393 catggaaaagttggattcaatgattagatt 422  Q
    ||||||||||||||||||||||||||||||    
T  36848245 catggaaaagttggattcaatgattagatt 36848216  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 3739027 - 3739067
Alignment:
Q  382 gtggcatttcacatggaaaagttggattcaatgattagatt 422  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  3739027 gtggcatttcacatgggaaagttggattcaatgattagatt 3739067  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 422
Target Start/End: Complemental strand, 42408620 - 42408584
Alignment:
Q  386 catttcacatggaaaagttggattcaatgattagatt 422  Q
    |||||||||||||||||||||||||||||||||||||    
T  42408620 catttcacatggaaaagttggattcaatgattagatt 42408584  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 48781509 - 48781549
Alignment:
Q  382 gtggcatttcacatggaaaagttggattcaatgattagatt 422  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  48781509 gtggcatttcatatcgaaaagttggattcaatgattagatt 48781549  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 393 - 422
Target Start/End: Complemental strand, 2713891 - 2713862
Alignment:
Q  393 catggaaaagttggattcaatgattagatt 422  Q
    ||||||||||||||||||||||||||||||    
T  2713891 catggaaaagttggattcaatgattagatt 2713862  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 393 - 422
Target Start/End: Complemental strand, 20422779 - 20422750
Alignment:
Q  393 catggaaaagttggattcaatgattagatt 422  Q
    ||||||||||||||||||||||||||||||    
T  20422779 catggaaaagttggattcaatgattagatt 20422750  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 393 - 422
Target Start/End: Original strand, 31876826 - 31876855
Alignment:
Q  393 catggaaaagttggattcaatgattagatt 422  Q
    ||||||||||||||||||||||||||||||    
T  31876826 catggaaaagttggattcaatgattagatt 31876855  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 393 - 422
Target Start/End: Original strand, 36944648 - 36944677
Alignment:
Q  393 catggaaaagttggattcaatgattagatt 422  Q
    ||||||||||||||||||||||||||||||    
T  36944648 catggaaaagttggattcaatgattagatt 36944677  T

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Target: scaffold1095 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 393 - 422
Target Start/End: Original strand, 1523 - 1552
Alignment:
Q  393 catggaaaagttggattcaatgattagatt 422  Q
    ||||||||||||||||||||||||||||||    
T  1523 catggaaaagttggattcaatgattagatt 1552  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 389 - 422
Target Start/End: Original strand, 32499283 - 32499316
Alignment:
Q  389 ttcacatggaaaagttggattcaatgattagatt 422  Q
    ||||||||| ||||||||||||||||||||||||    
T  32499283 ttcacatgggaaagttggattcaatgattagatt 32499316  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 393 - 422
Target Start/End: Original strand, 47814009 - 47814038
Alignment:
Q  393 catggaaaagttggattcaatgattagatt 422  Q
    ||||||||||||||||||||||||||||||    
T  47814009 catggaaaagttggattcaatgattagatt 47814038  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 422
Target Start/End: Original strand, 46732606 - 46732634
Alignment:
Q  394 atggaaaagttggattcaatgattagatt 422  Q
    |||||||||||||||||||||||||||||    
T  46732606 atggaaaagttggattcaatgattagatt 46732634  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 393 - 422
Target Start/End: Complemental strand, 3595943 - 3595914
Alignment:
Q  393 catggaaaagttggattcaatgattagatt 422  Q
    ||||||||||||||||||||||||||||||    
T  3595943 catggaaaagttggattcaatgattagatt 3595914  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 393 - 422
Target Start/End: Complemental strand, 20244219 - 20244190
Alignment:
Q  393 catggaaaagttggattcaatgattagatt 422  Q
    ||||||||||||||||||||||||||||||    
T  20244219 catggaaaagttggattcaatgattagatt 20244190  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 393 - 422
Target Start/End: Original strand, 30161971 - 30162000
Alignment:
Q  393 catggaaaagttggattcaatgattagatt 422  Q
    ||||||||||||||||||||||||||||||    
T  30161971 catggaaaagttggattcaatgattagatt 30162000  T

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