View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6593_low_7 (Length: 412)

Name: NF6593_low_7
Description: NF6593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6593_low_7
NF6593_low_7
[»] chr4 (6 HSPs)
chr4 (1-392)||(11806485-11806876)
chr4 (230-381)||(11837986-11838137)
chr4 (214-366)||(11855242-11855394)
chr4 (223-381)||(11430302-11430460)
chr4 (223-381)||(11565006-11565164)
chr4 (113-186)||(39522657-39522730)
[»] chr8 (6 HSPs)
chr8 (1-184)||(5291215-5291408)
chr8 (21-186)||(15124937-15125112)
chr8 (21-148)||(5305736-5305863)
chr8 (24-148)||(14950557-14950681)
chr8 (1-136)||(5283720-5283855)
chr8 (85-148)||(5312946-5313009)
[»] chr6 (1 HSPs)
chr6 (7-186)||(31527223-31527412)
[»] chr5 (1 HSPs)
chr5 (113-186)||(33002509-33002582)
[»] chr1 (2 HSPs)
chr1 (105-186)||(6076552-6076634)
chr1 (1-38)||(6076354-6076391)


Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 11806485 - 11806876
Alignment:
Q  1 caatagagaaaggaattagcagctttcaggatctgtgccttagacaaccatacaaactctttatcgcgtaacagctcaactaaattcttgaatttttctt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11806485 caatagagaaatgaattagcagctttcaggatctgtgccttagacaaccatacaaactctttatcgcgtaacagctcaactaagttcttgaatttttctt 11806584  T
Q  101 cccatgactgtaacttaatgatcttcatattatttacaatctctgaaggtgttcgtcctgtgcaatcatacactgtgactgacaatgatttttccagtag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11806585 cccatgactgtaacttaatgatcttcatattatttacaatctctgaaggtgttcgtcctgtgcaatcataaactgtgactgacaatgatttttccagtag 11806684  T
Q  201 catcagataggtcatgcctactgctccacaatgatttttccagtagcatggccatcaatgctcttagcccaagcatattcagctttgttcaaaggaaact 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11806685 catcaaataggtcatgcctactgctccacaatgatttttccagtagcatggccatcaatgctcttagcccaagcatattcagctttgttcaaaggaaact 11806784  T
Q  301 tcgagtcaataattgtcttgagttttccatccttcaccagttgtgcgagatgttccaagccctcgcctttgacagttacaaaatatggtacc 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  11806785 tcgagtcaataattgtcttgagttttccatccttcaccagttgtgcgagatgttccaagccctcacgtttgacagttacaaaatatggtacc 11806876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 230 - 381
Target Start/End: Original strand, 11837986 - 11838137
Alignment:
Q  230 aatgatttttccagtagcatggccatcaatgctcttagcccaagcatattcagctttgttcaaaggaaacttcgagtcaataattgtcttgagttttcca 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  11837986 aatgatttttccagtagcatggccatcaatgctcttagcccaagcatcttcagctttgctcaaaggaaacttagagtcgataattgtcttgagttttcca 11838085  T
Q  330 tccttcaccagttgtgcgagatgttccaagccctcgcctttgacagttacaa 381  Q
    |||||||| ||||| || ||||||||||||||||| |  || ||||||||||    
T  11838086 tccttcactagttgagcaagatgttccaagccctcacgcttaacagttacaa 11838137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 214 - 366
Target Start/End: Original strand, 11855242 - 11855394
Alignment:
Q  214 atgcctactgctccacaatgatttttccagtagcatggccatcaatgctcttagcccaagcatattcagctttgttcaaaggaaacttcgagtcaataat 313  Q
    ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||    
T  11855242 atgcctattgctccactatgatttttccagtagcatggccatcgatgctcttagcccaagcatcttcagctttgctcaaaggaaacttggagtcaataat 11855341  T
Q  314 tgtcttgagttttccatccttcaccagttgtgcgagatgttccaagccctcgc 366  Q
    |||||||||||||||||||||||| |  ||  |||||||||| ||||||||||    
T  11855342 tgtcttgagttttccatccttcactaactgaccgagatgttctaagccctcgc 11855394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 223 - 381
Target Start/End: Original strand, 11430302 - 11430460
Alignment:
Q  223 gctccacaatgatttttccagtagcatggccatcaatgctcttagcccaagcatattcagctttgttcaaaggaaacttcgagtcaataattgtcttgag 322  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||  |||||||||||| |||||||| |||||||| ||    
T  11430302 gctccacaatgatttttccagtagcatggccatcaatgatcttagaccaagcatattcagctttgcccaaaggaaacttggagtcaattattgtcttaag 11430401  T
Q  323 ttttccatccttcaccagttgtgcgagatgttccaagccctcgcctttgacagttacaa 381  Q
    ||||||||| ||||| | ||  || |||||||| |||||||| | ||||| ||||||||    
T  11430402 ttttccatctttcactaattcagctagatgttctaagccctcacgtttgatagttacaa 11430460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 223 - 381
Target Start/End: Complemental strand, 11565164 - 11565006
Alignment:
Q  223 gctccacaatgatttttccagtagcatggccatcaatgctcttagcccaagcatattcagctttgttcaaaggaaacttcgagtcaataattgtcttgag 322  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||  |||||||||||| |||||||| |||||||| ||    
T  11565164 gctccacaatgatttttccagtagcatggccatcaatgatcttagaccaagcatattcagctttgcccaaaggaaacttggagtcaattattgtcttaag 11565065  T
Q  323 ttttccatccttcaccagttgtgcgagatgttccaagccctcgcctttgacagttacaa 381  Q
    ||||||||| ||||| | ||  || |||||||| |||||||| | ||||| ||||||||    
T  11565064 ttttccatctttcactaattcagctagatgttctaagccctcacgtttgatagttacaa 11565006  T

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Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 39522730 - 39522657
Alignment:
Q  113 acttaatgatcttcatattatttacaatctctgaaggtgttcgtcctgtgcaatcatacactgtgactgacaat 186  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  39522730 acttaatgatcttcgtattatttacaatatctgaaggtgttcgtcctgtgcaatcataaattgtgactgacaat 39522657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 5291215 - 5291408
Alignment:
Q  1 caatagagaaaggaattagcagctttcaggatctgtgccttagacaaccatacaaactctttatcgcgtaacagctcaactaaattcttgaatttttctt 100  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  5291215 caatagagaaatgaattagtagctttcaggatctgtgccttcgacaaccatacaaactctttatcgcgtaacaactcaactaagttcttgaatttttctt 5291314  T
Q  101 cccatgactgtaacttaatgatcttcatattatttacaatctctgaaggt----------gttcgtcctgtgcaatcatacactgtgactgaca 184  Q
    ||||||||||||||||||||||||||||| |||||| || ||| |||| |          |||||||||||||||||||| |||||||||||||    
T  5291315 cccatgactgtaacttaatgatcttcatactatttagaacctccgaagttgatcgaagacgttcgtcctgtgcaatcataaactgtgactgaca 5291408  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 21 - 186
Target Start/End: Complemental strand, 15125112 - 15124937
Alignment:
Q  21 agctttcaggatctgtgccttagacaaccatacaaactctttatcgcgtaacagctcaactaaattcttgaatttttcttcccatgactgtaacttaatg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |  ||| ||||| ||||||||||||||||||||||| ||||||||||||    
T  15125112 agctttcaggatctgtgccttagacaaccatacaaactctttatcgcgcagcgactcgactaagttcttgaatttttcttcccatgattgtaacttaatg 15125013  T
Q  121 atcttcatattatttacaatctctgaaggt----------gttcgtcctgtgcaatcatacactgtgactgacaat 186  Q
    ||||||||| |||||| ||||||||||| |          |||||||||||||||||||| |||||||||||||||    
T  15125012 atcttcatactatttagaatctctgaagttgttcgaagacgttcgtcctgtgcaatcataaactgtgactgacaat 15124937  T

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Target: chr8; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 5305863 - 5305736
Alignment:
Q  21 agctttcaggatctgtgccttagacaaccatacaaactctttatcgcgtaacagctcaactaaattcttgaatttttcttcccatgactgtaacttaatg 120  Q
    |||||| |||||||||||||| ||||||||||||||||||||||  ||||||| ||||| ||| |||||||||||||||||||||||||||||||||||     
T  5305863 agctttaaggatctgtgcctttgacaaccatacaaactctttatgacgtaacaactcaattaagttcttgaatttttcttcccatgactgtaacttaata 5305764  T
Q  121 atcttcatattatttacaatctctgaag 148  Q
    ||||||||| |||| | |||||||||||    
T  5305763 atcttcatactattcagaatctctgaag 5305736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 14950557 - 14950681
Alignment:
Q  24 tttcaggatctgtgccttagacaaccatacaaactctttatcgcgtaacagctcaactaaattcttgaatttttcttcccatgactgtaacttaatgatc 123  Q
    ||||||||| |||| ||||||||||||||  |||||||||| ||||| |  ||| ||||| ||||||||||||||||||||||| |||||||| ||||||    
T  14950557 tttcaggatttgtgtcttagacaaccatatgaactctttattgcgtagcgactccactaagttcttgaatttttcttcccatgattgtaacttgatgatc 14950656  T
Q  124 ttcatattatttacaatctctgaag 148  Q
    |||||| |||||| |||||||||||    
T  14950657 ttcatactatttagaatctctgaag 14950681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 5283720 - 5283855
Alignment:
Q  1 caatagagaaaggaattagcagctttcaggatctgtgccttagacaaccatacaaactctttatcgcgtaacagctcaactaaattcttgaatttttctt 100  Q
    ||||| ||||| ||| ||| |||| ||||||||||||||||| ||| |||||||||||||||||| |||| |  ||| | ||| ||||| ||||||| ||    
T  5283720 caataaagaaatgaactagaagctctcaggatctgtgccttatacagccatacaaactctttatcacgtagcgactcgattaagttcttaaatttttttt 5283819  T
Q  101 cccatgactgtaacttaatgatcttcatattattta 136  Q
    ||||||| ||||||||||||||||||||| ||||||    
T  5283820 cccatgattgtaacttaatgatcttcatactattta 5283855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 5313009 - 5312946
Alignment:
Q  85 ttcttgaatttttcttcccatgactgtaacttaatgatcttcatattatttacaatctctgaag 148  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||    
T  5313009 ttctttaatttttcttcccatgattgtaacttaatgatcttcatactatttagaatctctgaag 5312946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 31527223 - 31527412
Alignment:
Q  7 agaaaggaattagcagctttcaggatctgtgccttagacaaccatacaaactctttatcgcgtaacagctcaactaaattcttgaatttttcttcccatg 106  Q
    ||||| ||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||||||   ||||||||| ||||| ||||||||||||||||    
T  31527223 agaaatgaactagaagctttcaggatctgcgacttagacaaccatacaaactctttatcgcgtaaggactcaactaagttcttaaatttttcttcccatg 31527322  T
Q  107 actgtaacttaatgatcttcatattatttacaatctctgaaggt----------gttcgtcctgtgcaatcatacactgtgactgacaat 186  Q
    | ||||||||||||||||||||| |||||| |||||| |||| |          |||||||||||||||||||| |||||||||||||||    
T  31527323 attgtaacttaatgatcttcatactatttagaatctcggaagttgatctaagacgttcgtcctgtgcaatcataaactgtgactgacaat 31527412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 33002509 - 33002582
Alignment:
Q  113 acttaatgatcttcatattatttacaatctctgaaggtgttcgtcctgtgcaatcatacactgtgactgacaat 186  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||    
T  33002509 acttaatgatcttcgtattatttacaatctctgaaggcgttcgtcctgtgcaatcataaattgtgactgacaat 33002582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 6076552 - 6076634
Alignment:
Q  105 tgactgtaacttaatgatctt-catattatttacaatctctgaaggtgttcgtcctgtgcaatcatacactgtgactgacaat 186  Q
    ||||||| ||||||||||||| | |||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  6076552 tgactgtgacttaatgatctttcgtattatttacaatctctgaaggcgttcgtcctgtccaatcataaactgtgactgacaat 6076634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6076354 - 6076391
Alignment:
Q  1 caatagagaaaggaattagcagctttcaggatctgtgc 38  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  6076354 caatagagaaatgaattagtagctttcaggatctgtgc 6076391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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